Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G179000.1 | Wheat | plastid | 90.7 | 91.55 |
| TraesCS7A01G177500.1 | Wheat | cytosol, plastid | 91.63 | 91.2 |
| TraesCS7A01G177700.1 | Wheat | cytosol, plastid | 91.63 | 91.2 |
| TraesCS7A01G236700.1 | Wheat | plastid | 89.3 | 90.57 |
| TraesCS7D01G179500.1 | Wheat | plastid | 90.23 | 90.23 |
| TraesCS7D01G179300.1 | Wheat | plastid | 87.91 | 89.15 |
| TraesCS7D01G179400.1 | Wheat | plastid | 85.58 | 87.62 |
| TraesCS7D01G232600.1 | Wheat | plastid | 83.72 | 86.12 |
| TraesCS7D01G179200.1 | Wheat | cytosol, plastid | 81.86 | 84.21 |
| HORVU7Hr1G036500.7 | Barley | plastid | 75.81 | 79.9 |
| TraesCS7A01G177800.1 | Wheat | nucleus | 77.67 | 72.61 |
| HORVU7Hr1G036470.3 | Barley | cytosol, nucleus | 80.47 | 71.49 |
| HORVU7Hr1G036570.2 | Barley | cytosol | 72.56 | 70.59 |
| HORVU7Hr1G036540.3 | Barley | mitochondrion, nucleus, plastid | 82.79 | 68.99 |
| TraesCS7D01G178900.1 | Wheat | cytosol | 38.14 | 67.21 |
| TraesCS7D01G179600.1 | Wheat | mitochondrion | 64.19 | 58.97 |
| OQU76071 | Sorghum | plastid | 40.47 | 43.07 |
| EER89430 | Sorghum | plastid | 45.12 | 42.73 |
| TraesCS6D01G295500.1 | Wheat | mitochondrion | 42.79 | 42.59 |
| KRH39841 | Soybean | mitochondrion | 28.37 | 41.5 |
| TraesCS5B01G123900.1 | Wheat | plastid | 46.05 | 41.42 |
| Zm00001d044874_P001 | Maize | cytosol, plastid | 39.53 | 40.87 |
| Solyc08g078700.2.1 | Tomato | plastid | 39.53 | 40.48 |
| PGSC0003DMT400012249 | Potato | mitochondrion | 39.53 | 40.28 |
| KRH23958 | Soybean | mitochondrion | 38.6 | 39.15 |
| OQU75612 | Sorghum | plastid | 40.47 | 39.01 |
| OQU75930 | Sorghum | plastid | 40.47 | 39.01 |
| VIT_02s0154g00480.t01 | Wine grape | mitochondrion, plastid | 35.81 | 38.31 |
| VIT_02s0154g00490.t01 | Wine grape | mitochondrion | 35.81 | 38.31 |
| EER89431 | Sorghum | plastid | 37.67 | 37.33 |
| CDY00476 | Canola | mitochondrion | 27.44 | 36.65 |
| VIT_16s0022g00510.t01 | Wine grape | mitochondrion | 35.35 | 36.54 |
| AT5G51440.1 | Thale cress | mitochondrion | 34.88 | 35.71 |
| AT4G25200.1 | Thale cress | mitochondrion | 34.88 | 35.71 |
| CDX89437 | Canola | mitochondrion | 35.35 | 35.68 |
| Bra013872.1-P | Field mustard | mitochondrion | 35.35 | 35.68 |
| GSMUA_Achr10P... | Banana | mitochondrion | 35.81 | 35.65 |
| CDY38862 | Canola | mitochondrion | 32.09 | 35.2 |
| Bra029174.1-P | Field mustard | mitochondrion | 32.09 | 35.03 |
| CDY03368 | Canola | mitochondrion | 34.42 | 34.74 |
| CDX99920 | Canola | mitochondrion | 25.12 | 33.75 |
| CDY32630 | Canola | mitochondrion | 25.58 | 32.35 |
| Bra028253.1-P | Field mustard | mitochondrion | 24.19 | 32.3 |
| KXG19616 | Sorghum | plastid | 38.6 | 30.86 |
| Os06t0219500-00 | Rice | mitochondrion | 41.86 | 29.13 |
| PGSC0003DMT400012247 | Potato | mitochondrion | 20.93 | 23.08 |
| Solyc08g078710.1.1 | Tomato | mitochondrion | 20.93 | 22.96 |
| PGSC0003DMT400012246 | Potato | plastid | 14.88 | 18.82 |
| Solyc08g078720.2.1 | Tomato | mitochondrion | 13.95 | 17.86 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G179100.1 | EnsemblPlantsGene:TraesCS7D01G179100 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF176 | PFAM:PF00011 | PFscan:PS01031 |
| SEG:seg | SUPFAM:SSF49764 | TIGR:cd06464 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7D:+:132157097..132158275
Molecular Weight (calculated)
23605.2 Da
IEP (calculated)
6.551
GRAVY (calculated)
-0.463
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAVACKGK DTAPARLLKS GAPVTFCSLG SPAVTAARRP YNTQAKEVSR YDDDDDDYSG RDLVIPSFFP QDVLDPLGAP TSMARLLSLM EDVATQTGGL
101: SSTAGAGASR LGRWVAKEDD DAVYLKVPMP GLTKEHVKVR ADKNILMIKG EGEKQPWDGD DDSKVLRYNR RIEMPAADAY KMDKIKAEMK NGVLWVTLLK
201: VKEEERKDVF HVKVE
101: SSTAGAGASR LGRWVAKEDD DAVYLKVPMP GLTKEHVKVR ADKNILMIKG EGEKQPWDGD DDSKVLRYNR RIEMPAADAY KMDKIKAEMK NGVLWVTLLK
201: VKEEERKDVF HVKVE
001: MASALALKRL LSSSIAPRSR SVLRPAVSSR LFNTNAVRSY DDDGENGDGV DLYRRSVPRR RGDFFSDVFD PFSPTRSVSQ VLNLMDQFME NPLLSATRGM
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN
Arabidopsis Description
HSP23.6HSP23.6-MITO [Source:UniProtKB/TrEMBL;Acc:A0A178USN5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.