Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G435000.1 | Wheat | mitochondrion | 76.35 | 95.34 |
| TraesCS6D01G380400.1 | Wheat | mitochondrion | 73.44 | 88.5 |
| HORVU6Hr1G091500.1 | Barley | mitochondrion | 85.06 | 86.5 |
| Os02t0819700-01 | Rice | mitochondrion | 53.11 | 68.09 |
| Zm00001d018501_P001 | Maize | mitochondrion | 47.72 | 61.5 |
| EES07768 | Sorghum | mitochondrion | 48.55 | 48.75 |
| GSMUA_Achr4P04340_001 | Banana | mitochondrion | 35.68 | 45.74 |
| Bra003197.1-P | Field mustard | mitochondrion | 34.02 | 43.62 |
| CDY07518 | Canola | mitochondrion | 34.02 | 43.39 |
| CDX67612 | Canola | mitochondrion | 34.02 | 43.39 |
| VIT_13s0019g04580.t01 | Wine grape | mitochondrion | 34.44 | 43.23 |
| KRH34848 | Soybean | mitochondrion | 33.61 | 43.09 |
| KRG91929 | Soybean | mitochondrion | 32.78 | 41.8 |
| Bra007101.1-P | Field mustard | mitochondrion | 33.61 | 41.33 |
| PGSC0003DMT400069831 | Potato | mitochondrion | 31.95 | 37.93 |
| Solyc05g053250.2.1 | Tomato | mitochondrion | 31.54 | 37.44 |
| AT3G54826.1 | Thale cress | mitochondrion, plastid | 33.61 | 36.32 |
| CDX78266 | Canola | plastid | 34.02 | 35.5 |
| CDX73445 | Canola | plastid | 34.02 | 35.5 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G395100.1 | EnsemblPlantsGene:TraesCS6A01G395100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR007853 |
| InterPro:Mt_import_TIM15 | InterPro:Znf_DNL-typ | PANTHER:PTHR20922 | PANTHER:PTHR20922:SF13 | PFAM:PF05180 | PFscan:PS51501 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:608118951..608120376
Molecular Weight (calculated)
25883.9 Da
IEP (calculated)
10.564
GRAVY (calculated)
-0.436
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPGGHGKKS RAERLPPLSV CPLCSARLFL SSPARRRRRA PSPSVAGRHA MAAGRFLPLA GRRIIAALSQ PSAPSSRGIF FPSTATAGLR SLQTIIEASS
101: NVSNERRHDL EDHKTGTPPR PASVPAAAES SFKVRDASTL KISPRHDMAM IFTCKVCETR SVKMASRDSY DNGVVVARCG GCNNLHLMAD RLGWFGQPGS
201: IEDFLADQGQ DVKKGDTDTL SFTLEDLAGS QVKSKEPSGE N
101: NVSNERRHDL EDHKTGTPPR PASVPAAAES SFKVRDASTL KISPRHDMAM IFTCKVCETR SVKMASRDSY DNGVVVARCG GCNNLHLMAD RLGWFGQPGS
201: IEDFLADQGQ DVKKGDTDTL SFTLEDLAGS QVKSKEPSGE N
001: MIKKASFIVL RFQNFTENRS VEFLLSLRLS MAARLLALRR ALSLFSNQQH RFPLSQVSTE QLSLSNSLFS RSHVYGRLFQ RQLSVIREAN EASVTNVCNS
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
Arabidopsis Description
Zim17-type zinc finger protein [Source:UniProtKB/TrEMBL;Acc:F4JE34]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.