Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G219900.1 | Wheat | mitochondrion | 76.7 | 76.7 |
| Zm00001d003148_P002 | Maize | mitochondrion | 69.9 | 74.23 |
| EES12451 | Sorghum | mitochondrion | 71.84 | 71.84 |
| PGSC0003DMT400067603 | Potato | mitochondrion | 69.9 | 69.23 |
| Solyc08g006700.2.1 | Tomato | cytosol, mitochondrion | 48.54 | 68.49 |
| GSMUA_Achr4P05940_001 | Banana | cytosol | 61.16 | 67.02 |
| GSMUA_Achr4P12740_001 | Banana | cytosol | 60.19 | 65.96 |
| KRH05385 | Soybean | mitochondrion | 65.05 | 65.69 |
| KRH15632 | Soybean | mitochondrion | 65.05 | 65.69 |
| KRH61646 | Soybean | mitochondrion | 65.05 | 65.69 |
| HORVU2Hr1G086230.3 | Barley | mitochondrion | 98.06 | 61.96 |
| AT5G10810.1 | Thale cress | cytosol | 65.05 | 61.47 |
| KRH52310 | Soybean | mitochondrion | 50.49 | 61.18 |
| CDY40120 | Canola | cytosol | 63.11 | 55.56 |
| Os04t0499200-01 | Rice | extracellular | 57.28 | 53.64 |
| VIT_04s0008g06800.t01 | Wine grape | plastid | 64.08 | 48.18 |
| TraesCS2B01G373500.1 | Wheat | plastid | 100.0 | 46.4 |
| CDX97062 | Canola | cytosol, plastid | 60.19 | 44.93 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G355000.1 | EnsemblPlantsGene:TraesCS2A01G355000 | Gene3D:3.30.2260.10 | GO:GO:0006139 | GO:GO:0006221 | GO:GO:0007049 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045747 | InterPro:EHR_sf | InterPro:Enh_rudimentary | InterPro:IPR035912 | PANTHER:PTHR12373 | PANTHER:PTHR12373:SF0 |
| PFAM:PD008105 | PFAM:PF01133 | PIRSF:PIRSF016393 | SUPFAM:SSF143875 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2A:+:597505616..597512170
Molecular Weight (calculated)
12043.5 Da
IEP (calculated)
9.037
GRAVY (calculated)
-0.403
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRHTIVLV QPSPNKASRT FMDFSSLNQA LDGICARYEK KIMDINPMAR NFTYDITDLY NFIDGLADIS ALVYDHQLQA FLPYDRQWIK QKMFQHLKNQ
101: ARQ
101: ARQ
001: MANHNSSRHT IILLQNSPSR ATRTFMDYDS IGQAMDGICG LYERKLKEIN PSLRNISYDI ADLYNFIDGL ADLSALVYDH SISAYLPYDR QWIKQKAFHH
101: LKRIANGGR
101: LKRIANGGR
Arabidopsis Description
ATEREnhancer of rudimentary homolog [Source:UniProtKB/Swiss-Prot;Acc:Q96319]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.