CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX88756
CDX97062
CDY37996
CDY40120
CDY60371
CDY67373
CDY67995

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10810.1	CDX88756	AT4G07950.1	21798944
AT5G10810.1	CDY37996	AT4G07950.1	21798944
AT5G10810.1	CDY60371	AT4G07950.1	21798944
AT5G10810.1	CDY67373	AT4G07950.1	21798944
AT5G10810.1	CDY67995	AT4G07950.1	21798944
AT5G10810.1	CDX97062	AT5G10810.1	21798944
AT5G10810.1	CDY40120	AT5G10810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G10810.1	Thale cress	cytosol	66.67	84.4
CDY40120	Canola	cytosol	66.67	78.63
KRH05385	Soybean	mitochondrion	53.62	72.55
GSMUA_Achr4P12740_001	Banana	cytosol	48.55	71.28
KRH15632	Soybean	mitochondrion	52.17	70.59
GSMUA_Achr4P05940_001	Banana	cytosol	47.83	70.21
Solyc08g006700.2.1	Tomato	cytosol, mitochondrion	36.96	69.86
EES12451	Sorghum	mitochondrion	51.45	68.93
KRH61646	Soybean	mitochondrion	50.72	68.63
PGSC0003DMT400067603	Potato	mitochondrion	51.45	68.27
Zm00001d051061_P001	Maize	cytosol, mitochondrion	50.0	66.99
EES07137	Sorghum	cytosol, mitochondrion	49.28	66.02
Zm00001d003148_P002	Maize	mitochondrion	46.38	65.98
KRH52310	Soybean	mitochondrion	40.58	65.88
HORVU6Hr1G056200.1	Barley	mitochondrion	48.55	65.05
TraesCS6A01G219900.1	Wheat	mitochondrion	48.55	65.05
TraesCS6B01G249300.1	Wheat	mitochondrion	48.55	65.05
TraesCS6D01G202800.1	Wheat	mitochondrion	48.55	65.05
TraesCS2A01G355000.1	Wheat	cytosol	44.93	60.19
VIT_04s0008g06800.t01	Wine grape	plastid	56.52	56.93
Os02t0611450-00	Rice	extracellular	23.19	53.33
Os04t0499200-01	Rice	extracellular	37.68	47.27
HORVU2Hr1G086230.3	Barley	mitochondrion	45.65	38.65
TraesCS2B01G373500.1	Wheat	plastid	44.93	27.93

Protein Annotations

Gene3D:3.30.2260.10	MapMan:35.1	GO:A0A078E7Q3	EnsemblPlants:CDX97062	ProteinID:CDX97062	ProteinID:CDX97062.1
InterPro:EHR_sf	InterPro:Enh_rudimentary	GO:GO:0006139	GO:GO:0006221	GO:GO:0007049	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045747
EnsemblPlantsGene:GSBRNA2T00104038001	InterPro:IPR035912	PFAM:PD008105	PFAM:PF01133	PIRSF:PIRSF016393	ScanProsite:PS01290
PANTHER:PTHR12373	PANTHER:PTHR12373:SF0	SUPFAM:SSF143875	UniParc:UPI0004EF12E9	SEG:seg	:

Description

BnaC09g45630D

Coordinates

chrLK031897:-:437980..440084

Molecular Weight (calculated)

15751.7 Da

IEP (calculated)

8.206

GRAVY (calculated)

-0.418

Length

138 amino acids

Sequence
(BLAST)

001: MPFVARICDS FSSLSSSSVE LSESNYQLRM ANNQNGRHTI ILLQNSPSRA TRTFMDYDSI GQAIDGICGL YERKLKEINP SLRNLSYDIA DLYNFIDGLT
101: DLSAMVYENS MNAYMPYDRQ WIKHKAFHHL KKLASGGR

Best Arabidopsis Sequence Match ( AT5G10810.1 )
(BLAST)

001: MANHNSSRHT IILLQNSPSR ATRTFMDYDS IGQAMDGICG LYERKLKEIN PSLRNISYDI ADLYNFIDGL ADLSALVYDH SISAYLPYDR QWIKQKAFHH
101: LKRIANGGR

Arabidopsis Description

ATEREnhancer of rudimentary homolog [Source:UniProtKB/Swiss-Prot;Acc:Q96319]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.