Subcellular Localization
min:
: max
Winner_takes_all: cytosol, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003148_P002 | |
| Zm00001d051061_P001 | |
| Zm00001d051430_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10810.1 | Zm00001d051430_P001 | AT4G07950.1 | 21798944 |
| AT5G10810.1 | Zm00001d003148_P002 | AT5G10810.1 | 21798944 |
| AT5G10810.1 | Zm00001d051061_P001 | AT5G10810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07137 | Sorghum | cytosol, mitochondrion | 98.06 | 98.06 |
| TraesCS6D01G202800.1 | Wheat | mitochondrion | 96.12 | 96.12 |
| HORVU6Hr1G056200.1 | Barley | mitochondrion | 96.12 | 96.12 |
| TraesCS6A01G219900.1 | Wheat | mitochondrion | 96.12 | 96.12 |
| TraesCS6B01G249300.1 | Wheat | mitochondrion | 96.12 | 96.12 |
| Zm00001d003148_P002 | Maize | mitochondrion | 78.64 | 83.51 |
| PGSC0003DMT400067603 | Potato | mitochondrion | 78.64 | 77.88 |
| GSMUA_Achr4P05940_001 | Banana | cytosol | 70.87 | 77.66 |
| Solyc08g006700.2.1 | Tomato | cytosol, mitochondrion | 54.37 | 76.71 |
| GSMUA_Achr4P12740_001 | Banana | cytosol | 68.93 | 75.53 |
| KRH05385 | Soybean | mitochondrion | 73.79 | 74.51 |
| KRH15632 | Soybean | mitochondrion | 73.79 | 74.51 |
| KRH61646 | Soybean | mitochondrion | 69.9 | 70.59 |
| Os02t0611450-00 | Rice | extracellular | 39.81 | 68.33 |
| AT5G10810.1 | Thale cress | cytosol | 71.84 | 67.89 |
| KRH52310 | Soybean | mitochondrion | 53.4 | 64.71 |
| CDY40120 | Canola | cytosol | 68.93 | 60.68 |
| VIT_04s0008g06800.t01 | Wine grape | plastid | 74.76 | 56.2 |
| CDX97062 | Canola | cytosol, plastid | 66.99 | 50.0 |
Protein Annotations
| EntrezGene:103653754 | Gene3D:3.30.2260.10 | MapMan:35.1 | ProteinID:AQK53533.1 | UniProt:B6T273 | InterPro:EHR_sf |
| EMBL:EU959088 | EMBL:EU962171 | InterPro:Enh_rudimentary | GO:GO:0006139 | GO:GO:0006221 | GO:GO:0007049 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045747 | InterPro:IPR035912 | PFAM:PD008105 | PFAM:PF01133 | PIRSF:PIRSF016393 | ScanProsite:PS01290 |
| PANTHER:PTHR12373 | PANTHER:PTHR12373:SF0 | SUPFAM:SSF143875 | UniParc:UPI000182C1D9 | EnsemblPlantsGene:Zm00001d051061 | EnsemblPlants:Zm00001d051061_P001 |
| EnsemblPlants:Zm00001d051061_T001 | : | : | : | : | : |
Description
Enhancer of rudimentary homolog
Coordinates
chr4:-:139808491..139811963
Molecular Weight (calculated)
12071.6 Da
IEP (calculated)
9.008
GRAVY (calculated)
-0.323
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRHTIILM QPSQNRASRT FMDYNSINHA LDGICGLYER KIRDINPMIP NITYDISDLY NFIDGLADIS ALVYDHSIQA FLPYDRQWIK QKLFQHLKKL
101: AQR
101: AQR
001: MANHNSSRHT IILLQNSPSR ATRTFMDYDS IGQAMDGICG LYERKLKEIN PSLRNISYDI ADLYNFIDGL ADLSALVYDH SISAYLPYDR QWIKQKAFHH
101: LKRIANGGR
101: LKRIANGGR
Arabidopsis Description
ATEREnhancer of rudimentary homolog [Source:UniProtKB/Swiss-Prot;Acc:Q96319]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.