Factsheet for GSMUA_Achr4P05940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr4P05940_001
GSMUA_Achr4P12740_001
GSMUA_Achr4P30460_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10810.1	GSMUA_Achr11P...	AT4G07950.1	21798944
AT5G10810.1	GSMUA_Achr4P30460_001	AT4G07950.1	21798944
AT5G10810.1	GSMUA_Achr4P05940_001	AT5G10810.1	21798944
AT5G10810.1	GSMUA_Achr4P12740_001	AT5G10810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P12740_001	Banana	cytosol	95.74	95.74
Solyc08g006700.2.1	Tomato	cytosol, mitochondrion	57.45	73.97
PGSC0003DMT400067603	Potato	mitochondrion	80.85	73.08
Zm00001d051061_P001	Maize	cytosol, mitochondrion	77.66	70.87
KRH15632	Soybean	mitochondrion	76.6	70.59
KRH05385	Soybean	mitochondrion	75.53	69.61
EES07137	Sorghum	cytosol, mitochondrion	75.53	68.93
AT5G10810.1	Thale cress	cytosol	78.72	67.89
HORVU6Hr1G056200.1	Barley	mitochondrion	73.4	66.99
TraesCS6D01G202800.1	Wheat	mitochondrion	73.4	66.99
TraesCS6B01G249300.1	Wheat	mitochondrion	73.4	66.99
TraesCS6A01G219900.1	Wheat	mitochondrion	73.4	66.99
KRH61646	Soybean	mitochondrion	72.34	66.67
EES12451	Sorghum	mitochondrion	71.28	65.05
Zm00001d003148_P002	Maize	mitochondrion	63.83	61.86
KRH52310	Soybean	mitochondrion	55.32	61.18
TraesCS2A01G355000.1	Wheat	cytosol	67.02	61.16
CDY40120	Canola	cytosol	73.4	58.97
Os02t0611450-00	Rice	extracellular	37.23	58.33
VIT_04s0008g06800.t01	Wine grape	plastid	78.72	54.01
Os04t0499200-01	Rice	extracellular	58.51	50.0
CDX97062	Canola	cytosol, plastid	70.21	47.83
HORVU2Hr1G086230.3	Barley	mitochondrion	68.09	39.26
TraesCS2B01G373500.1	Wheat	plastid	67.02	28.38

Protein Annotations

Gene3D:3.30.2260.10	MapMan:35.1	InterPro:EHR_sf	InterPro:Enh_rudimentary	GO:GO:0006139	GO:GO:0006221
GO:GO:0007049	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045747	EnsemblPlantsGene:GSMUA_Achr4G05940_001	EnsemblPlants:GSMUA_Achr4P05940_001	EnsemblPlants:GSMUA_Achr4T05940_001	InterPro:IPR035912
UniProt:M0SLG1	PFAM:PD008105	PFAM:PF01133	PIRSF:PIRSF016393	ScanProsite:PS01290	PANTHER:PTHR12373
PANTHER:PTHR12373:SF0	SUPFAM:SSF143875	UniParc:UPI0002955CE5	:	:	:

Description

Enhancer of rudimentary homolog [Source:GMGC_GENE;Acc:GSMUA_Achr4G05940_001]

Coordinates

chr4:-:4590552..4594454

Molecular Weight (calculated)

10968.1 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.298

Length

94 amino acids

Sequence
(BLAST)

1: MQSSPNRATR TFMDYDSISQ AMDGICGLYE RKLKEINPTI QNITYDISDL YNFIDGLADL SALIFDHSIQ AFLPYDRLWI KQRMFQHLKR LASS

Best Arabidopsis Sequence Match ( AT5G10810.1 )
(BLAST)

001: MANHNSSRHT IILLQNSPSR ATRTFMDYDS IGQAMDGICG LYERKLKEIN PSLRNISYDI ADLYNFIDGL ADLSALVYDH SISAYLPYDR QWIKQKAFHH
101: LKRIANGGR

Arabidopsis Description

ATEREnhancer of rudimentary homolog [Source:UniProtKB/Swiss-Prot;Acc:Q96319]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.