Factsheet for GSMUA_Achr4P30460_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P19150_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07950.1	GSMUA_Achr4P19150_001	AT1G65000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	73.64	78.64
Os02t0672700-01	Rice	extracellular, nucleus, plastid	75.45	75.45
Zm00001d051430_P001	Maize	cytosol, extracellular, nucleus	70.0	70.0
KXG31022	Sorghum	cytosol, extracellular, nucleus	70.0	70.0
VIT_15s0046g00090.t01	Wine grape	nucleus	59.09	58.56
KRG99913	Soybean	nucleus	53.64	53.15
KRH49087	Soybean	cytosol, mitochondrion, nucleus	52.73	52.25
AT4G07950.1	Thale cress	nucleus	48.18	50.0
AT1G01210.3	Thale cress	nucleus	48.18	50.0
PGSC0003DMT400060328	Potato	cytosol, nucleus, plastid	50.0	49.55
Solyc05g055890.2.1	Tomato	nucleus	50.0	49.55
HORVU6Hr1G064960.2	Barley	cytosol, extracellular, plastid	42.73	49.47
TraesCS6D01G236300.1	Wheat	cytosol, extracellular, plastid	39.09	47.78
Bra024774.1-P	Field mustard	nucleus	44.55	47.57
TraesCS6B01G270500.1	Wheat	cytosol, extracellular, plastid	38.18	46.67
CDY67373	Canola	nucleus	43.64	46.6
CDY60371	Canola	nucleus	43.64	46.6
CDX88756	Canola	nucleus	43.64	46.6
Bra006662.1-P	Field mustard	nucleus	43.64	46.6
TraesCS6A01G255000.1	Wheat	cytosol, extracellular, plastid	41.82	39.66
CDY67995	Canola	cytosol, extracellular, nucleus	43.64	28.57
Bra032625.1-P	Field mustard	cytosol, extracellular, nucleus	43.64	28.57
CDY37996	Canola	nucleus	43.64	26.67

Protein Annotations

Gene3D:2.20.25.10	MapMan:35.2	InterPro:DNA-dir_RNA_pol_M/15kDasu	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006379	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0042779	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr4G30460_001	EnsemblPlants:GSMUA_Achr4P30460_001	EnsemblPlants:GSMUA_Achr4T30460_001	InterPro:IPR001222	UniProt:M0STF8	PFAM:PF01096
PFAM:PF02150	PIRSF:PIRSF005586	ScanProsite:PS00466	PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF12
InterPro:Rpa12/Rpb9/Rpc10/TFS	SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783	UniParc:UPI00029695FE	InterPro:Zn_ribbon_RPC11_C
InterPro:Znf_TFIIS	:	:	:	:	:

Description

Putative DNA-directed RNA polymerase III subunit RPC10 [Source:GMGC_GENE;Acc:GSMUA_Achr4G30460_001]

Coordinates

chr4:+:28041856..28043834

Molecular Weight (calculated)

12633.3 Da

IEP (calculated)

8.091

GRAVY (calculated)

-0.497

Length

110 amino acids

Sequence
(BLAST)

001: MEFCPMCGNL LQIEPAGSGR RLRFFCPTCP YVCPVTNKIV KKQHLAKKEL ETIFSGADAM KFAPKTATTC PRCHNGEAFF RQMQIRSADE PMTTFYKCCN
101: DNCQHEWRDD

Best Arabidopsis Sequence Match ( AT4G07950.1 )
(BLAST)

001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE

Arabidopsis Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.