Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G65000.1 | GSMUA_Achr11P... | AT3G52930.1 | 21798944 |
| AT1G65000.1 | GSMUA_Achr11P... | AT3G52930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07440 | Canola | nucleus | 60.2 | 75.64 |
| VIT_16s0039g01640.t01 | Wine grape | nucleus | 65.31 | 72.73 |
| AT1G65000.1 | Thale cress | cytosol, mitochondrion, nucleus | 61.22 | 72.29 |
| KRH24014 | Soybean | nucleus | 64.29 | 68.48 |
| PGSC0003DMT400008206 | Potato | cytosol, mitochondrion, nucleus | 66.33 | 67.01 |
| PGSC0003DMT400068097 | Potato | cytosol, mitochondrion, nucleus | 66.33 | 67.01 |
| Solyc03g097200.2.1 | Tomato | cytosol, mitochondrion, nucleus | 65.31 | 65.98 |
| TraesCS4A01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 59.18 | 65.91 |
| TraesCS5B01G561200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 62.24 | 65.59 |
| EER90478 | Sorghum | plastid | 62.24 | 64.89 |
| TraesCS5D01G568600.1 | Wheat | plastid | 61.22 | 64.52 |
| CDY39296 | Canola | cytosol, mitochondrion, nucleus | 60.2 | 62.77 |
| KRH29302 | Soybean | cytosol | 39.8 | 57.35 |
| Os03t0857750-00 | Rice | cytosol | 7.14 | 15.56 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P19150_001 | EnsemblPlants:GSMUA_Achr4T19150_001 | EnsemblPlantsGene:GSMUA_Achr4G19150_001 | PANTHER:PTHR35106 | PANTHER:PTHR35106:SF1 | SEG:seg |
| UniParc:UPI0002951E2B | UniProt:M0SQ78 | MapMan:35.2 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G19150_001]
Coordinates
chr4:+:20194756..20197837
Molecular Weight (calculated)
10983.6 Da
IEP (calculated)
5.634
GRAVY (calculated)
-0.857
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MEKGGATLEE GLGGGGVVTQ RGKLCRRCKE TFNSSSNTPS SCRFHPSFFV CRRHDDQKRY YELRPDDPPY AAKFYDCCGA EDPEALGCTT DFHVSYDD
1: MEKKEMEKLC QRCKQSYTDL SNETSSCRFH PSFFVCRRHD DQKRYYELKP DDPPYAAKFY DCCGAEDPNA PGCVTNPHIS YDD
Arabidopsis Description
At1g65000 [Source:UniProtKB/TrEMBL;Acc:Q8GXU4]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.