Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07440 | Canola | nucleus | 84.34 | 89.74 |
| CDY39296 | Canola | cytosol, mitochondrion, nucleus | 81.93 | 72.34 |
| VIT_16s0039g01640.t01 | Wine grape | nucleus | 75.9 | 71.59 |
| KRH24014 | Soybean | nucleus | 73.49 | 66.3 |
| PGSC0003DMT400008206 | Potato | cytosol, mitochondrion, nucleus | 75.9 | 64.95 |
| PGSC0003DMT400068097 | Potato | cytosol, mitochondrion, nucleus | 75.9 | 64.95 |
| TraesCS4A01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 68.67 | 64.77 |
| EER90478 | Sorghum | plastid | 72.29 | 63.83 |
| TraesCS5B01G561200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 71.08 | 63.44 |
| TraesCS5D01G568600.1 | Wheat | plastid | 71.08 | 63.44 |
| Solyc03g097200.2.1 | Tomato | cytosol, mitochondrion, nucleus | 73.49 | 62.89 |
| GSMUA_Achr4P19150_001 | Banana | cytosol, nucleus, plastid | 72.29 | 61.22 |
| KRH29302 | Soybean | cytosol | 44.58 | 54.41 |
| Os03t0857750-00 | Rice | cytosol | 8.43 | 15.56 |
Protein Annotations
| MapMan:35.2 | EntrezGene:842808 | UniProt:A0A178WGM4 | ProteinID:AEE34314.1 | EMBL:AK118039 | ArrayExpress:AT1G65000 |
| EnsemblPlantsGene:AT1G65000 | RefSeq:AT1G65000 | TAIR:AT1G65000 | RefSeq:AT1G65000-TAIR-G | EnsemblPlants:AT1G65000.1 | TAIR:AT1G65000.1 |
| EMBL:BT004666 | ncoils:Coil | GO:GO:0008150 | RefSeq:NP_176680.2 | ProteinID:OAP16901.1 | PO:PO:0000293 |
| PO:PO:0007616 | PO:PO:0009029 | PO:PO:0009047 | PO:PO:0025195 | PANTHER:PTHR35106 | PANTHER:PTHR35106:SF1 |
| UniProt:Q8GXU4 | UniParc:UPI000000C415 | : | : | : | : |
Description
At1g65000 [Source:UniProtKB/TrEMBL;Acc:Q8GXU4]
Coordinates
chr1:+:24146925..24148801
Molecular Weight (calculated)
9752.2 Da
IEP (calculated)
5.616
GRAVY (calculated)
-1.152
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MEKKEMEKLC QRCKQSYTDL SNETSSCRFH PSFFVCRRHD DQKRYYELKP DDPPYAAKFY DCCGAEDPNA PGCVTNPHIS YDD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.