Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G568600.1 | Wheat | plastid | 92.47 | 92.47 |
| TraesCS4A01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 86.02 | 90.91 |
| CDY07440 | Canola | nucleus | 60.22 | 71.79 |
| AT1G65000.1 | Thale cress | cytosol, mitochondrion, nucleus | 63.44 | 71.08 |
| EER90478 | Sorghum | plastid | 70.97 | 70.21 |
| VIT_16s0039g01640.t01 | Wine grape | nucleus | 64.52 | 68.18 |
| KRH24014 | Soybean | nucleus | 63.44 | 64.13 |
| GSMUA_Achr4P19150_001 | Banana | cytosol, nucleus, plastid | 65.59 | 62.24 |
| CDY39296 | Canola | cytosol, mitochondrion, nucleus | 62.37 | 61.7 |
| PGSC0003DMT400008206 | Potato | cytosol, mitochondrion, nucleus | 62.37 | 59.79 |
| PGSC0003DMT400068097 | Potato | cytosol, mitochondrion, nucleus | 62.37 | 59.79 |
| Solyc03g097200.2.1 | Tomato | cytosol, mitochondrion, nucleus | 61.29 | 58.76 |
| KRH29302 | Soybean | cytosol | 38.71 | 52.94 |
| Os03t0857750-00 | Rice | cytosol | 11.83 | 24.44 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G561200.1 | EnsemblPlantsGene:TraesCS5B01G561200 | PANTHER:PTHR35106 | PANTHER:PTHR35106:SF1 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr5B:-:707432420..707432767
Molecular Weight (calculated)
10410.9 Da
IEP (calculated)
6.732
GRAVY (calculated)
-0.889
Length
93 amino acids
Sequence
(BLAST)
(BLAST)
1: MEKDTATAAT ATAAARVCRR CKAKYSPSDN TPRSCRFHPS FFVCRRHDDQ KRYYELKDGD PPYAAKFYDC CGAEDPDAAG CATGFHLSYD DPE
1: MEKKEMEKLC QRCKQSYTDL SNETSSCRFH PSFFVCRRHD DQKRYYELKP DDPPYAAKFY DCCGAEDPNA PGCVTNPHIS YDD
Arabidopsis Description
At1g65000 [Source:UniProtKB/TrEMBL;Acc:Q8GXU4]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.