Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G65000.1 | Thale cress | cytosol, mitochondrion, nucleus | 89.74 | 84.34 |
| CDY39296 | Canola | cytosol, mitochondrion, nucleus | 93.59 | 77.66 |
| VIT_16s0039g01640.t01 | Wine grape | nucleus | 80.77 | 71.59 |
| EER90478 | Sorghum | plastid | 76.92 | 63.83 |
| KRH24014 | Soybean | nucleus | 74.36 | 63.04 |
| PGSC0003DMT400008206 | Potato | cytosol, mitochondrion, nucleus | 78.21 | 62.89 |
| PGSC0003DMT400068097 | Potato | cytosol, mitochondrion, nucleus | 78.21 | 62.89 |
| Solyc03g097200.2.1 | Tomato | cytosol, mitochondrion, nucleus | 76.92 | 61.86 |
| TraesCS4A01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 69.23 | 61.36 |
| TraesCS5D01G568600.1 | Wheat | plastid | 73.08 | 61.29 |
| TraesCS5B01G561200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 71.79 | 60.22 |
| GSMUA_Achr4P19150_001 | Banana | cytosol, nucleus, plastid | 75.64 | 60.2 |
| KRH29302 | Soybean | cytosol | 42.31 | 48.53 |
| Os03t0857750-00 | Rice | cytosol | 10.26 | 17.78 |
Protein Annotations
| EnsemblPlants:CDY07440 | EnsemblPlantsGene:GSBRNA2T00124434001 | PANTHER:PTHR35106 | PANTHER:PTHR35106:SF1 | ProteinID:CDY07440 | ProteinID:CDY07440.1 |
| UniParc:UPI0004EE2AF4 | UniProt:A0A078EZC8 | MapMan:35.2 | : | : | : |
Description
BnaA07g25190DBnaA07g25190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EZC8]
Coordinates
chrLK031978:+:730595..731327
Molecular Weight (calculated)
8935.2 Da
IEP (calculated)
6.218
GRAVY (calculated)
-1.017
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MEKLCQRCKG SYRDSSNNAS SCRFHPSFFV CRRHDDQKRY YELGPEDPPY AAKFYDCCGA EDPNAPGCVT SPHISYDD
1: MEKKEMEKLC QRCKQSYTDL SNETSSCRFH PSFFVCRRHD DQKRYYELKP DDPPYAAKFY DCCGAEDPNA PGCVTNPHIS YDD
Arabidopsis Description
At1g65000 [Source:UniProtKB/TrEMBL;Acc:Q8GXU4]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.