Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g03830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G65000.1 | VIT_08s0007g03830.t01 | AT3G52930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07440 | Canola | nucleus | 71.59 | 80.77 |
| KRH24014 | Soybean | nucleus | 79.55 | 76.09 |
| AT1G65000.1 | Thale cress | cytosol, mitochondrion, nucleus | 71.59 | 75.9 |
| PGSC0003DMT400008206 | Potato | cytosol, mitochondrion, nucleus | 75.0 | 68.04 |
| PGSC0003DMT400068097 | Potato | cytosol, mitochondrion, nucleus | 75.0 | 68.04 |
| CDY39296 | Canola | cytosol, mitochondrion, nucleus | 71.59 | 67.02 |
| Solyc03g097200.2.1 | Tomato | cytosol, mitochondrion, nucleus | 72.73 | 65.98 |
| TraesCS4A01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 65.91 | 65.91 |
| TraesCS5D01G568600.1 | Wheat | plastid | 69.32 | 65.59 |
| GSMUA_Achr4P19150_001 | Banana | cytosol, nucleus, plastid | 72.73 | 65.31 |
| TraesCS5B01G561200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 68.18 | 64.52 |
| EER90478 | Sorghum | plastid | 68.18 | 63.83 |
| KRH29302 | Soybean | cytosol | 46.59 | 60.29 |
| Os03t0857750-00 | Rice | cytosol | 10.23 | 20.0 |
Protein Annotations
| ArrayExpress:VIT_16s0039g01640 | EMBL:FN595750 | EnsemblPlants:VIT_16s0039g01640.t01 | EnsemblPlantsGene:VIT_16s0039g01640 | EntrezGene:100254491 | PANTHER:PTHR35106 |
| PANTHER:PTHR35106:SF1 | ProteinID:CCB50585 | ProteinID:CCB50585.1 | RefSeq:XP_002272028 | RefSeq:XP_002272028.1 | RefSeq:XP_002272028.2 |
| unigene:Vvi.4229 | UniParc:UPI0002108D7F | UniProt:F6HED9 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr16:+:1245891..1252115
Molecular Weight (calculated)
10137.4 Da
IEP (calculated)
4.676
GRAVY (calculated)
-1.161
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MERAGEEGRE EKLCKRCQQM YSPSSNDSSS CRFHPSFFVC RRHDDQKRYY ELGPNDPPYA AKFYDCCGAE DPEASGCTTS FHVSYDDD
1: MEKKEMEKLC QRCKQSYTDL SNETSSCRFH PSFFVCRRHD DQKRYYELKP DDPPYAAKFY DCCGAEDPNA PGCVTNPHIS YDD
Arabidopsis Description
At1g65000 [Source:UniProtKB/TrEMBL;Acc:Q8GXU4]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.