Factsheet for TraesCS5D01G568600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G391100.1
TraesCS3A01G391500.1
TraesCS3B01G422900.1
TraesCS3B01G423200.1
TraesCS3D01G383700.1
TraesCS3D01G384000.1
TraesCS3D01G384100.2
TraesCS5A01G009400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65000.1	TraesCS3A01G391100.1	AT3G52930.1	21798944
AT1G65000.1	TraesCS3A01G391500.1	AT3G52930.1	21798944
AT1G65000.1	TraesCS3B01G422900.1	AT3G52930.1	21798944
AT1G65000.1	TraesCS3B01G423200.1	AT3G52930.1	21798944
AT1G65000.1	TraesCS3D01G383700.1	AT3G52930.1	21798944
AT1G65000.1	TraesCS3D01G384000.1	AT3G52930.1	21798944
AT1G65000.1	TraesCS3D01G384100.2	AT3G52930.1	21798944
AT1G65000.1	TraesCS5A01G009400.1	AT3G52930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G561200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	92.47	92.47
TraesCS4A01G318200.1	Wheat	cytosol, mitochondrion, nucleus	86.02	90.91
CDY07440	Canola	nucleus	61.29	73.08
EER90478	Sorghum	plastid	72.04	71.28
AT1G65000.1	Thale cress	cytosol, mitochondrion, nucleus	63.44	71.08
VIT_16s0039g01640.t01	Wine grape	nucleus	65.59	69.32
KRH24014	Soybean	nucleus	63.44	64.13
GSMUA_Achr4P19150_001	Banana	cytosol, nucleus, plastid	64.52	61.22
CDY39296	Canola	cytosol, mitochondrion, nucleus	61.29	60.64
PGSC0003DMT400008206	Potato	cytosol, mitochondrion, nucleus	62.37	59.79
PGSC0003DMT400068097	Potato	cytosol, mitochondrion, nucleus	62.37	59.79
Solyc03g097200.2.1	Tomato	cytosol, mitochondrion, nucleus	61.29	58.76
KRH29302	Soybean	cytosol	39.78	54.41
Os03t0857750-00	Rice	cytosol	11.83	24.44

Protein Annotations

EnsemblPlants:TraesCS5D01G568600.1

EnsemblPlantsGene:TraesCS5D01G568600

PANTHER:PTHR35106

PANTHER:PTHR35106:SF1

SEG:seg

MapMan:35.2

Description

No Description!

Coordinates

chr5D:+:565709852..565710215

Molecular Weight (calculated)

10340.8 Da

IEP (calculated)

6.732

GRAVY (calculated)

-0.851

Length

93 amino acids

Sequence
(BLAST)

1: MEKDTAATAT AAAAARVCRR CKSKYSPSGN TPQSCRFHPS FFVCRRHDDQ KRYYELKDGD PPYAAKFYDC CGAEDPDAAG CATSFHLSYD DPE

Best Arabidopsis Sequence Match ( AT1G65000.1 )
(BLAST)

1: MEKKEMEKLC QRCKQSYTDL SNETSSCRFH PSFFVCRRHD DQKRYYELKP DDPPYAAKFY DCCGAEDPNA PGCVTNPHIS YDD

Arabidopsis Description

At1g65000 [Source:UniProtKB/TrEMBL;Acc:Q8GXU4]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.