Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006894 | |
| PGSC0003DMT400072632 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G65000.1 | PGSC0003DMT400006894 | AT3G52930.1 | 21798944 |
| AT1G65000.1 | PGSC0003DMT400072632 | AT3G52930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400008206 | Potato | cytosol, mitochondrion, nucleus | 100.0 | 100.0 |
| Solyc03g097200.2.1 | Tomato | cytosol, mitochondrion, nucleus | 97.94 | 97.94 |
| CDY07440 | Canola | nucleus | 62.89 | 78.21 |
| AT1G65000.1 | Thale cress | cytosol, mitochondrion, nucleus | 64.95 | 75.9 |
| KRH24014 | Soybean | nucleus | 71.13 | 75.0 |
| VIT_16s0039g01640.t01 | Wine grape | nucleus | 68.04 | 75.0 |
| GSMUA_Achr4P19150_001 | Banana | cytosol, nucleus, plastid | 67.01 | 66.33 |
| CDY39296 | Canola | cytosol, mitochondrion, nucleus | 61.86 | 63.83 |
| TraesCS4A01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 57.73 | 63.64 |
| TraesCS5B01G561200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 59.79 | 62.37 |
| TraesCS5D01G568600.1 | Wheat | plastid | 59.79 | 62.37 |
| EER90478 | Sorghum | plastid | 59.79 | 61.7 |
| KRH29302 | Soybean | cytosol | 40.21 | 57.35 |
| Os03t0857750-00 | Rice | cytosol | 8.25 | 17.78 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400068097 | EnsemblPlantsGene:PGSC0003DMG402026486 | EntrezGene:102587701 | PANTHER:PTHR35106 | PANTHER:PTHR35106:SF1 | PGSC:PGSC0003DMG402026486 |
| RefSeq:XP_006347594.1 | UniParc:UPI00029565A6 | UniProt:M1CIF6 | MapMan:35.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402026486]
Coordinates
chr3:+:46541146..46545710
Molecular Weight (calculated)
10973.5 Da
IEP (calculated)
6.233
GRAVY (calculated)
-1.076
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MAEKAGKTAG VEAEGNRSRE KVCKRCKQIY DSASNNSNSC RFHPSFFVCR RHDDQKRYYE LGPDDPPYAA KFYDCCGAED PQASGCTTNF HVSYDDE
1: MEKKEMEKLC QRCKQSYTDL SNETSSCRFH PSFFVCRRHD DQKRYYELKP DDPPYAAKFY DCCGAEDPNA PGCVTNPHIS YDD
Arabidopsis Description
At1g65000 [Source:UniProtKB/TrEMBL;Acc:Q8GXU4]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.