Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G65000.1 | KRH16972 | AT3G52930.1 | 21798944 |
| AT1G65000.1 | KRH72603 | AT3G52930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH24014 | Soybean | nucleus | 67.65 | 50.0 |
| VIT_16s0039g01640.t01 | Wine grape | nucleus | 60.29 | 46.59 |
| AT1G65000.1 | Thale cress | cytosol, mitochondrion, nucleus | 54.41 | 44.58 |
| CDY07440 | Canola | nucleus | 48.53 | 42.31 |
| PGSC0003DMT400008206 | Potato | cytosol, mitochondrion, nucleus | 57.35 | 40.21 |
| PGSC0003DMT400068097 | Potato | cytosol, mitochondrion, nucleus | 57.35 | 40.21 |
| Solyc03g097200.2.1 | Tomato | cytosol, mitochondrion, nucleus | 57.35 | 40.21 |
| GSMUA_Achr4P19150_001 | Banana | cytosol, nucleus, plastid | 57.35 | 39.8 |
| TraesCS5D01G568600.1 | Wheat | plastid | 54.41 | 39.78 |
| TraesCS4A01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 51.47 | 39.77 |
| TraesCS5B01G561200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 52.94 | 38.71 |
| CDY39296 | Canola | cytosol, mitochondrion, nucleus | 52.94 | 38.3 |
| EER90478 | Sorghum | plastid | 50.0 | 36.17 |
| Os03t0857750-00 | Rice | cytosol | 5.88 | 8.89 |
Protein Annotations
| EMBL:ACUP02006797 | EnsemblPlants:KRH29302 | EnsemblPlantsGene:GLYMA_11G108600 | PANTHER:PTHR35106 | PANTHER:PTHR35106:SF1 | ProteinID:KRH29302 |
| ProteinID:KRH29302.1 | UniParc:UPI0006ED853B | UniProt:A0A0R0HFD5 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr11:-:8287140..8289351
Molecular Weight (calculated)
7610.8 Da
IEP (calculated)
4.501
GRAVY (calculated)
-0.631
Length
68 amino acids
Sequence
(BLAST)
(BLAST)
1: MEKEKHWISK SNSKFVVGAP GALRLCVRYY ELGPDDPPYA AKFYDCCGAE DPEASGCTTN FHVSYDED
1: MEKKEMEKLC QRCKQSYTDL SNETSSCRFH PSFFVCRRHD DQKRYYELKP DDPPYAAKFY DCCGAEDPNA PGCVTNPHIS YDD
Arabidopsis Description
At1g65000 [Source:UniProtKB/TrEMBL;Acc:Q8GXU4]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.