Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07440 | Canola | nucleus | 77.66 | 93.59 |
| AT1G65000.1 | Thale cress | cytosol, mitochondrion, nucleus | 72.34 | 81.93 |
| VIT_16s0039g01640.t01 | Wine grape | nucleus | 67.02 | 71.59 |
| KRH24014 | Soybean | nucleus | 62.77 | 64.13 |
| EER90478 | Sorghum | plastid | 63.83 | 63.83 |
| TraesCS4A01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 58.51 | 62.5 |
| TraesCS5B01G561200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 61.7 | 62.37 |
| PGSC0003DMT400008206 | Potato | cytosol, mitochondrion, nucleus | 63.83 | 61.86 |
| PGSC0003DMT400068097 | Potato | cytosol, mitochondrion, nucleus | 63.83 | 61.86 |
| TraesCS5D01G568600.1 | Wheat | plastid | 60.64 | 61.29 |
| Solyc03g097200.2.1 | Tomato | cytosol, mitochondrion, nucleus | 62.77 | 60.82 |
| GSMUA_Achr4P19150_001 | Banana | cytosol, nucleus, plastid | 62.77 | 60.2 |
| KRH29302 | Soybean | cytosol | 38.3 | 52.94 |
| Os03t0857750-00 | Rice | cytosol | 8.51 | 17.78 |
Protein Annotations
| EnsemblPlants:CDY39296 | EnsemblPlantsGene:GSBRNA2T00067543001 | PANTHER:PTHR35106 | PANTHER:PTHR35106:SF1 | ProteinID:CDY39296 | ProteinID:CDY39296.1 |
| SEG:seg | UniParc:UPI0004EECD97 | UniProt:A0A078HNX4 | MapMan:35.2 | : | : |
Description
BnaC06g26950DBnaC06g26950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNX4]
Coordinates
chrLK032444:-:302800..304363
Molecular Weight (calculated)
10959.6 Da
IEP (calculated)
4.884
GRAVY (calculated)
-0.974
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MEMERKTKEM EEKLCRRCKG SYRDSSNNAS SCRFHPSFFV CRRHDDQTEP VLTFWYYELG PEDPPYAAKF YDCCGAEDPN APGCVTTPHI SYDD
1: MEKKEMEKLC QRCKQSYTDL SNETSSCRFH PSFFVCRRHD DQKRYYELKP DDPPYAAKFY DCCGAEDPNA PGCVTNPHIS YDD
Arabidopsis Description
At1g65000 [Source:UniProtKB/TrEMBL;Acc:Q8GXU4]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.