CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 29364282

msms PMID: 29364282 doi

S Pahlow, A Ostendorp, L Krüßel, J Kehr

Molecular Plant Genetics, Universität Hamburg., Molecular Plant Genetics, Universität Hamburg; julia.kehr@uni-hamburg.de.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52930.1	CDY32970	AT5G42980.1	15352244
AT3G52930.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78134	Canola	cytosol	100.0	100.0
CDX67550	Canola	cytosol	99.72	99.72
CDY13330	Canola	cytosol	99.72	99.72
CDX76248	Canola	cytosol	99.44	99.44
CDY66283	Canola	cytosol	99.44	99.44
AT3G52930.1	Thale cress	cytosol	98.04	98.04
Bra006960.1-P	Field mustard	cytosol	99.16	93.92
KRH16972	Soybean	nucleus	87.71	87.71
KRH72603	Soybean	nucleus	86.31	86.31
VIT_08s0007g03830.t01	Wine grape	cytosol, extracellular	85.47	85.47
CDY43716	Canola	cytosol	81.56	85.13
Solyc10g083570.1.1	Tomato	extracellular	83.8	83.8
PGSC0003DMT400072632	Potato	cytosol	83.8	83.8
Solyc09g009260.2.1	Tomato	extracellular, nucleus, plastid	82.12	82.12
PGSC0003DMT400006894	Potato	cytosol	81.56	81.56
GSMUA_Achr11P...	Banana	cytosol	29.33	80.15
GSMUA_Achr11P...	Banana	cytosol	43.02	79.38
CDY69912	Canola	cytosol	9.5	75.56
CDY12112	Canola	plastid	53.91	50.39
CDX90302	Canola	plastid	53.91	50.39
CDX82019	Canola	plastid	55.59	50.0
CDY37348	Canola	plastid	54.19	49.87
CDY40400	Canola	plastid	54.19	49.87
CDY15898	Canola	plastid	53.63	49.23
CDX99600	Canola	plastid	53.63	49.23
CDX72725	Canola	plastid	53.91	49.11
CDY22401	Canola	plastid	53.91	49.11
CDY42595	Canola	plastid	54.47	48.87
CDY72367	Canola	plastid	39.66	44.8

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	MapMan:2.1.1.2
MapMan:3.1.2.2	Gene3D:3.20.20.70	GO:A0A078CPY8	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM	EnsemblPlants:CDX73593
ProteinID:CDX73593	ProteinID:CDX73593.1	InterPro:FBA_I	GO:GO:0003674	GO:GO:0003824	GO:GO:0004332
GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00109147001	InterPro:IPR013785	PFAM:PF00274
ScanProsite:PS00158	PANTHER:PTHR11627	PANTHER:PTHR11627:SF24	MetaCyc:PWY-1042	MetaCyc:PWY-1861	MetaCyc:PWY-5484
MetaCyc:PWY-6142	MetaCyc:PWY-7385	SUPFAM:SSF51569	UniPathway:UPA00109	UniParc:UPI0001BA87EB	:

Description

BnaC08g24100D

Coordinates

chrLK031799:+:1478060..1479960

Molecular Weight (calculated)

38450.9 Da

IEP (calculated)

6.717

GRAVY (calculated)

-0.197

Length

358 amino acids

Sequence
(BLAST)

001: MSAFTSKFAD ELIANAAYIG TPGKGILAAD ESTGTIGKRL ASINVENVET NRRALRELLF TAPGALPCLS GVILFEETLY QKSSDGKLFV DILKEGGVLP
101: GIKVDKGTVE LAGTNGETTT QGLDGLGERC KKYYEAGARF AKWRAVLKIG ENEPSEHSIH ENAYGLARYA VICQENGLVP IVEPEILVDG SHDIHKCAAV
201: TERVLAACYK ALSDHHVLLE GTLLKPNMVT PGSDSAKVAP EVIAEHTVRA LQRTVPAAVP AIVFLSGGQS EEEATKNLNA MNQLKTKKPW SLSFSFGRAL
301: QQSTLKTWAG KEENVKAAQE ALYVRCKANS EATLGTYKGD AKLGDGAAES LHVKDYKY

Best Arabidopsis Sequence Match ( AT3G52930.1 )
(BLAST)

001: MSAFTSKFAD ELIANAAYIG TPGKGILAAD ESTGTIGKRL ASINVENVET NRRNLRELLF TAPGALPCLS GVILFEETLY QKSSDGKLFV DILKEGGVLP
101: GIKVDKGTVE LAGTDGETTT QGLDGLGDRC KKYYEAGARF AKWRAVLKIG ENEPSEHSIH ENAYGLARYA VICQENGLVP IVEPEILVDG SHDIQKCAAV
201: TERVLAACYK ALSDHHVLLE GTLLKPNMVT PGSDSPKVSP EVIAEHTVRA LQRTVPAAVP AIVFLSGGQS EEEATRNLNA MNQLKTKKPW SLSFSFGRAL
301: QQSTLKTWAG KEENVKAAQE ALYVRCKANS EATLGTYKGD AKLGDGAAES LHVKDYKY

Arabidopsis Description

FBA8Fructose-bisphosphate aldolase [Source:UniProtKB/TrEMBL;Acc:A0A178V8L4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.