CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72603	Soybean	nucleus	96.09	96.09
CDY13330	Canola	cytosol	87.99	87.99
CDX67550	Canola	cytosol	87.99	87.99
CDY66283	Canola	cytosol	87.71	87.71
CDX73593	Canola	cytosol, extracellular	87.71	87.71
CDX76248	Canola	cytosol	87.71	87.71
CDX78134	Canola	cytosol	87.71	87.71
AT2G36460.1	Thale cress	cytosol	87.43	87.43
Bra028543.1-P	Field mustard	cytosol	87.15	87.15
AT3G52930.1	Thale cress	cytosol	86.87	86.87
KRH67855	Soybean	endoplasmic reticulum	86.59	86.59
VIT_08s0007g03830.t01	Wine grape	cytosol, extracellular	86.59	86.59
Bra019639.1-P	Field mustard	cytosol	85.75	85.75
KRH20036	Soybean	cytosol, mitochondrion, nucleus	84.64	84.64
KRH32664	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	84.64	84.64
PGSC0003DMT400072632	Potato	cytosol	84.36	84.36
Solyc09g009260.2.1	Tomato	extracellular, nucleus, plastid	84.36	84.36
Solyc10g083570.1.1	Tomato	extracellular	84.36	84.36
PGSC0003DMT400006894	Potato	cytosol	83.8	83.8
TraesCS3B01G422900.1	Wheat	cytosol	79.61	83.09
Os01t0905800-01	Rice	cytosol, extracellular	82.96	82.96
Bra006960.1-P	Field mustard	cytosol	87.15	82.54
TraesCS3A01G391500.1	Wheat	cytosol, golgi, unclear	82.4	82.4
EES06798	Sorghum	cytosol	82.4	82.4
TraesCS3D01G384000.1	Wheat	cytosol, golgi	82.4	82.4
TraesCS3B01G423200.1	Wheat	cytosol	82.12	82.12
TraesCS3D01G383700.1	Wheat	golgi	82.12	82.12
TraesCS3A01G391100.1	Wheat	golgi	81.84	81.84
GSMUA_Achr11P...	Banana	cytosol	44.13	81.44
EES04064	Sorghum	cytosol	80.45	81.13
Zm00001d042453_P001	Maize	plasma membrane	80.17	80.85
Zm00001d012103_P001	Maize	extracellular, plasma membrane	79.89	80.56
Bra017234.1-P	Field mustard	cytosol	77.09	80.47
CDY43716	Canola	cytosol	76.82	80.17
Os10t0163340-01	Rice	cytosol, extracellular, plasma membrane, plastid	80.17	80.17
Os08t0120600-01	Rice	cytosol, plasma membrane, plastid	80.17	79.28
TraesCS3D01G384100.2	Wheat	cytosol	81.01	79.23
KRH14187	Soybean	cytosol, nucleus	77.93	78.15
HORVU3Hr1G088570.1	Barley	mitochondrion, plasma membrane	82.68	78.1
KRH73948	Soybean	cytosol, endoplasmic reticulum	77.65	77.87
Os05t0402700-01	Rice	extracellular	72.35	77.78
GSMUA_Achr11P...	Banana	cytosol	28.21	77.1
HORVU3Hr1G088500.2	Barley	cytosol	47.77	76.34
HORVU3Hr1G088540.1	Barley	cytosol, mitochondrion, plastid	82.12	75.97
TraesCS5A01G009400.1	Wheat	cytosol	47.21	66.54
KRH24377	Soybean	plastid	57.26	51.51
KRH29349	Soybean	plastid	57.26	51.38
KRH29352	Soybean	plastid	57.26	51.38
KRH60768	Soybean	plastid	55.87	50.63
KRG90928	Soybean	nucleus, plastid	54.75	50.52
KRH35847	Soybean	endoplasmic reticulum	55.03	50.51
KRH26114	Soybean	plastid	51.96	49.21
Bra017233.1-P	Field mustard	nucleus, plastid	84.64	22.9

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	MapMan:2.1.1.2
MapMan:3.1.2.2	Gene3D:3.20.20.70	EMBL:ACUP02009037	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM	InterPro:FBA_I
EnsemblPlantsGene:GLYMA_14G189400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004332	GO:GO:0005975	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016829	UniProt:I1MB71	InterPro:IPR013785	EnsemblPlants:KRH16972	ProteinID:KRH16972
ProteinID:KRH16972.1	PFAM:PF00274	ScanProsite:PS00158	PANTHER:PTHR11627	PANTHER:PTHR11627:SF24	MetaCyc:PWY-1042
MetaCyc:PWY-1861	MetaCyc:PWY-5484	MetaCyc:PWY-6142	MetaCyc:PWY-7385	SUPFAM:SSF51569	UniParc:UPI000233B12F

Description

hypothetical protein

Coordinates

chr14:-:45416092..45419126

Molecular Weight (calculated)

38355.8 Da

IEP (calculated)

7.630

GRAVY (calculated)

-0.172

Length

358 amino acids

Sequence
(BLAST)

001: MSHFKGKYHD ELIVNAAYIG TPGKGILAAD ESTGTIGKRL ASISVENVES NRRALRELLF TAPGALKYLS GVILFEETLY QSTAAGKPFV EVLKEAGVLP
101: GIKVDKGTVE LAGTNGETTT QGLDGLGQRC AKYYEAGARF AKWRAVLKIG PNEPSELAIH ENAYGLARYA VICQENGLVP IVEPEILVDG SHDIHKCAAV
201: TERVLAACYK ALNDHHVLLE GTLLKPNMVT PGSNSAKVSP QVVAEHTVRA LQRTVPAAVP AIVFLSGGQS EEEASVNLNA INQVNGKKPW SLSFSFGRAL
301: QQSTLKAWSG KEENVKKAQE ALLVRAKANS EATLGTYKGN SKLADGASES LHVEDYKY

Best Arabidopsis Sequence Match ( AT2G36460.1 )
(BLAST)

001: MSSFTSKFAD ELIANAAYIG TPGKGILAAD ESTGTIGKRL ASINVENVES NRRALRELLF TTPGALPCLS GVILFEETLY QKSSDGTPFV DMLKSAGVLP
101: GIKVDKGTVE LAGTNGETTT QGLDGLGDRC KKYYEAGARF AKWRAVLKIG VNEPSQLAIH ENAYGLARYA VICQENGLVP IVEPEILVDG SHDIQKCAAV
201: TERVLAACYK ALSDHHVLLE GTLLKPNMVT PGSESAKVAP EVIAEHTVRA LQRTVPAAVP AIVFLSGGQS EEEATRNLNA MNQLKTKKPW SLSFSFGRAL
301: QQSTLKTWGG KEENVKKAQE AFLVRCKANS EATLGAYKGD AKLGEGAAES LHVKDYKY

Arabidopsis Description

FBA6Fructose-bisphosphate aldolase 6, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.