CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g03830.t01	Wine grape	cytosol, extracellular	87.43	87.43
KRH20036	Soybean	cytosol, mitochondrion, nucleus	87.43	87.43
KRH32664	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	86.87	86.87
KRH16972	Soybean	nucleus	86.59	86.59
KRH72603	Soybean	nucleus	85.47	85.47
Bra009517.1-P	Field mustard	cytosol	85.2	84.96
TraesCS3B01G422900.1	Wheat	cytosol	81.28	84.84
Solyc09g009260.2.1	Tomato	extracellular, nucleus, plastid	84.64	84.64
PGSC0003DMT400006894	Potato	cytosol	84.36	84.36
Solyc10g083570.1.1	Tomato	extracellular	84.36	84.36
TraesCS3D01G384000.1	Wheat	cytosol, golgi	84.08	84.08
TraesCS3B01G423200.1	Wheat	cytosol	84.08	84.08
TraesCS3A01G391500.1	Wheat	cytosol, golgi, unclear	84.08	84.08
PGSC0003DMT400072632	Potato	cytosol	83.8	83.8
Os01t0905800-01	Rice	cytosol, extracellular	83.8	83.8
TraesCS3D01G383700.1	Wheat	golgi	83.8	83.8
TraesCS3A01G391100.1	Wheat	golgi	83.52	83.52
EES04064	Sorghum	cytosol	82.4	83.1
EES06798	Sorghum	cytosol	82.96	82.96
Zm00001d012103_P001	Maize	extracellular, plasma membrane	82.12	82.82
Zm00001d042453_P001	Maize	plasma membrane	81.84	82.54
GSMUA_Achr11P...	Banana	cytosol	44.41	81.96
TraesCS3D01G384100.2	Wheat	cytosol	83.52	81.69
Os10t0163340-01	Rice	cytosol, extracellular, plasma membrane, plastid	81.01	81.01
HORVU3Hr1G088570.1	Barley	mitochondrion, plasma membrane	84.64	79.95
GSMUA_Achr11P...	Banana	cytosol	29.05	79.39
KRH73948	Soybean	cytosol, endoplasmic reticulum	78.77	78.99
KRH14187	Soybean	cytosol, nucleus	78.77	78.99
Os05t0402700-01	Rice	extracellular	73.18	78.68
AT5G03690.1	Thale cress	mitochondrion	85.75	78.12
Os08t0120600-01	Rice	cytosol, plasma membrane, plastid	78.77	77.9
HORVU3Hr1G088540.1	Barley	cytosol, mitochondrion, plastid	84.08	77.78
HORVU3Hr1G088500.2	Barley	cytosol	47.49	75.89
TraesCS5A01G009400.1	Wheat	cytosol	48.88	68.9
KRG90928	Soybean	nucleus, plastid	56.42	52.06
KRH35847	Soybean	endoplasmic reticulum	56.7	52.05
KRH60768	Soybean	plastid	57.26	51.9
KRH24377	Soybean	plastid	57.54	51.76
KRH29352	Soybean	plastid	57.26	51.38
KRH29349	Soybean	plastid	57.26	51.38
KRH26114	Soybean	plastid	53.35	50.53

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	EntrezGene:100527532
MapMan:2.1.1.2	MapMan:3.1.2.2	Gene3D:3.20.20.70	EMBL:ACUP02002084	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM
InterPro:FBA_I	EnsemblPlantsGene:GLYMA_03G191500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004332	GO:GO:0005975
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	UniProt:I1JPX8	InterPro:IPR013785	EnsemblPlants:KRH67855
ProteinID:KRH67855	ProteinID:KRH67855.1	PFAM:PF00274	ScanProsite:PS00158	PANTHER:PTHR11627	PANTHER:PTHR11627:SF24
MetaCyc:PWY-1042	MetaCyc:PWY-1861	MetaCyc:PWY-5484	MetaCyc:PWY-6142	MetaCyc:PWY-7385	SUPFAM:SSF51569
UniParc:UPI0001CAB178	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:40229184..40232238

Molecular Weight (calculated)

38512.9 Da

IEP (calculated)

6.782

GRAVY (calculated)

-0.229

Length

358 amino acids

Sequence
(BLAST)

001: MSSFKSKYQD ELIANAAYIG TPGKGILAAD ESTGTIGKRL ASINVENVEA NRRALRELLF TTPGAFECLS GVILFEETLY QKTASGKPFV ELMKEGGVLP
101: GIKVDKGTVE LAGTNGETTT QGLDGLGARC QKYYEAGARF AKWRAVLKIG PNEPSELAIH ENAYGLARYA VICQENGLVP IVEPEILVDG PHDINKCAEV
201: TERVLAACYK ALNDHHVLLE GTLLKPNMVT PGSESKKVTP EVIAQYTVTA LQRTVPAAVP AIVFLSGGQS EEEATLNLNA MNKSQGKKPW SLSFSFGRAL
301: QQSTLKAWGG KDENIKKAQD ALFARCNANS HATLGTYKGD ATLAEGASES LHVKDYKY

Best Arabidopsis Sequence Match ( AT2G36460.1 )
(BLAST)

001: MSSFTSKFAD ELIANAAYIG TPGKGILAAD ESTGTIGKRL ASINVENVES NRRALRELLF TTPGALPCLS GVILFEETLY QKSSDGTPFV DMLKSAGVLP
101: GIKVDKGTVE LAGTNGETTT QGLDGLGDRC KKYYEAGARF AKWRAVLKIG VNEPSQLAIH ENAYGLARYA VICQENGLVP IVEPEILVDG SHDIQKCAAV
201: TERVLAACYK ALSDHHVLLE GTLLKPNMVT PGSESAKVAP EVIAEHTVRA LQRTVPAAVP AIVFLSGGQS EEEATRNLNA MNQLKTKKPW SLSFSFGRAL
301: QQSTLKTWGG KEENVKKAQE AFLVRCKANS EATLGAYKGD AKLGEGAAES LHVKDYKY

Arabidopsis Description

FBA6Fructose-bisphosphate aldolase 6, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.