CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20036	Soybean	cytosol, mitochondrion, nucleus	98.32	98.32
KRH67855	Soybean	endoplasmic reticulum	86.87	86.87
KRH16972	Soybean	nucleus	84.64	84.64
KRH72603	Soybean	nucleus	84.36	84.36
Bra009517.1-P	Field mustard	cytosol	84.36	84.12
VIT_08s0007g03830.t01	Wine grape	cytosol, extracellular	83.52	83.52
Solyc09g009260.2.1	Tomato	extracellular, nucleus, plastid	83.24	83.24
Solyc10g083570.1.1	Tomato	extracellular	82.4	82.4
PGSC0003DMT400006894	Potato	cytosol	82.4	82.4
TraesCS3A01G391500.1	Wheat	cytosol, golgi, unclear	82.4	82.4
PGSC0003DMT400072632	Potato	cytosol	82.12	82.12
Os01t0905800-01	Rice	cytosol, extracellular	82.12	82.12
TraesCS3B01G423200.1	Wheat	cytosol	82.12	82.12
TraesCS3B01G422900.1	Wheat	cytosol	78.49	81.92
TraesCS3D01G384000.1	Wheat	cytosol, golgi	81.84	81.84
TraesCS3A01G391100.1	Wheat	golgi	81.84	81.84
TraesCS3D01G383700.1	Wheat	golgi	81.56	81.56
EES06798	Sorghum	cytosol	81.01	81.01
TraesCS3D01G384100.2	Wheat	cytosol	81.84	80.05
EES04064	Sorghum	cytosol	79.33	80.0
Zm00001d042453_P001	Maize	plasma membrane	79.05	79.72
GSMUA_Achr11P...	Banana	cytosol	43.02	79.38
Os10t0163340-01	Rice	cytosol, extracellular, plasma membrane, plastid	79.33	79.33
Zm00001d012103_P001	Maize	extracellular, plasma membrane	78.49	79.15
GSMUA_Achr11P...	Banana	cytosol	28.77	78.63
Os08t0120600-01	Rice	cytosol, plasma membrane, plastid	78.77	77.9
HORVU3Hr1G088570.1	Barley	mitochondrion, plasma membrane	82.4	77.84
AT5G03690.1	Thale cress	mitochondrion	84.92	77.35
HORVU3Hr1G088540.1	Barley	cytosol, mitochondrion, plastid	81.84	75.71
Os05t0402700-01	Rice	extracellular	70.39	75.68
KRH14187	Soybean	cytosol, nucleus	75.14	75.35
KRH73948	Soybean	cytosol, endoplasmic reticulum	74.86	75.07
HORVU3Hr1G088500.2	Barley	cytosol	45.81	73.21
TraesCS5A01G009400.1	Wheat	cytosol	49.72	70.08
KRG90928	Soybean	nucleus, plastid	55.03	50.77
KRH35847	Soybean	endoplasmic reticulum	55.03	50.51
KRH60768	Soybean	plastid	55.03	49.87
KRH24377	Soybean	plastid	55.03	49.5
KRH26114	Soybean	plastid	52.23	49.47
KRH29352	Soybean	plastid	55.03	49.37
KRH29349	Soybean	plastid	55.03	49.37

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	MapMan:2.1.1.2
MapMan:3.1.2.2	Gene3D:3.20.20.70	EMBL:ACUP02006148	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM	InterPro:FBA_I
EnsemblPlantsGene:GLYMA_10G066700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004332	GO:GO:0005975	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016829	UniProt:I1L983	InterPro:IPR013785	EnsemblPlants:KRH32664	ProteinID:KRH32664
ProteinID:KRH32664.1	PFAM:PF00274	ScanProsite:PS00158	PANTHER:PTHR11627	PANTHER:PTHR11627:SF24	MetaCyc:PWY-1042
MetaCyc:PWY-1861	MetaCyc:PWY-5484	MetaCyc:PWY-6142	MetaCyc:PWY-7385	SUPFAM:SSF51569	UniParc:UPI000233CD9C

Description

hypothetical protein

Coordinates

chr10:+:6469910..6473508

Molecular Weight (calculated)

38494.1 Da

IEP (calculated)

7.774

GRAVY (calculated)

-0.212

Length

358 amino acids

Sequence
(BLAST)

001: MSSFKSKFQD ELIANASYIG TPGKGILAAD ESTGTIGKRL ASINVENVET NRRILRELLF TAPGCLERLS GVILFEETLY QKSAAGVPFV DILKKGGVLP
101: GIKVDKGTVE LAGTNGETTT QGLDDLAQRC KKYYEAGARF AKWRAVLKIG PNEPSPLCIH ENANGLARYA AICQENGLVP IVEPEILSDG PHDIAKCADV
201: TERVLAACYK ALNDHHVLLE GTLLKPNMVT PGSESARVKA EVIAEHTVRA LQRTVPPAVP AIVFLSGGQS EEEATVNLNA MNQLKGKKPW SLTFSYGRAL
301: QQSTLKAWGG KDENIPKAQS ALLVRCKANS EATLGTYKGD ATLGEGASES LHVKDYKY

Best Arabidopsis Sequence Match ( AT2G36460.1 )
(BLAST)

001: MSSFTSKFAD ELIANAAYIG TPGKGILAAD ESTGTIGKRL ASINVENVES NRRALRELLF TTPGALPCLS GVILFEETLY QKSSDGTPFV DMLKSAGVLP
101: GIKVDKGTVE LAGTNGETTT QGLDGLGDRC KKYYEAGARF AKWRAVLKIG VNEPSQLAIH ENAYGLARYA VICQENGLVP IVEPEILVDG SHDIQKCAAV
201: TERVLAACYK ALSDHHVLLE GTLLKPNMVT PGSESAKVAP EVIAEHTVRA LQRTVPAAVP AIVFLSGGQS EEEATRNLNA MNQLKTKKPW SLSFSFGRAL
301: QQSTLKTWGG KEENVKKAQE AFLVRCKANS EATLGAYKGD AKLGEGAAES LHVKDYKY

Arabidopsis Description

FBA6Fructose-bisphosphate aldolase 6, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.