CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20443193
nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 20443193 doi

N Ahsan, Y Nanjo, H Sawada, Y Kohno, S Komatsu

National Institute of Crop Science, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29349	Soybean	plastid	100.0	100.0
KRH24377	Soybean	plastid	98.75	99.0
KRH60768	Soybean	plastid	91.73	92.66
VIT_04s0023g03010.t01	Wine grape	plastid	90.73	91.41
VIT_03s0038g00670.t01	Wine grape	plastid	90.23	90.45
PGSC0003DMT400031351	Potato	cytosol, extracellular, plastid	87.47	88.35
Solyc02g062340.2.1	Tomato	plastid	87.47	88.35
GSMUA_Achr5P19920_001	Banana	plasma membrane, plastid	85.46	87.21
CDY12112	Canola	plastid	82.96	86.42
CDX90302	Canola	plastid	82.71	86.16
GSMUA_Achr8P17280_001	Banana	plastid	83.46	85.82
Bra010717.1-P	Field mustard	plastid	84.46	85.75
CDY22401	Canola	plastid	84.46	85.75
CDX82019	Canola	plastid	85.46	85.68
AT4G38970.1	Thale cress	plastid	85.46	85.68
GSMUA_Achr6P17900_001	Banana	plastid	83.46	85.6
Os11t0171300-01	Rice	extracellular, plastid	83.21	85.57
CDX72725	Canola	plastid	83.96	85.24
Bra031181.1-P	Field mustard	plastid	84.71	84.5
Bra033589.1-P	Field mustard	plastid	83.21	84.48
EES09371	Sorghum	plastid	81.7	84.02
Zm00001d023559_P001	Maize	plastid	81.7	84.02
AT2G21330.1	Thale cress	plastid	83.96	83.96
TraesCS5D01G122700.1	Wheat	plastid	80.95	83.9
TraesCS5A01G108000.1	Wheat	plastid	80.95	83.9
CDY15898	Canola	plastid	81.95	83.85
Bra030303.1-P	Field mustard	plastid	81.95	83.85
CDX99600	Canola	plastid	81.95	83.85
EES16731	Sorghum	plastid	81.7	83.8
HORVU5Hr1G032980.1	Barley	plastid	80.7	83.64
TraesCS5B01G115300.1	Wheat	golgi	80.7	83.64
HORVU4Hr1G019570.1	Barley	plastid	81.2	83.51
TraesCS4D01G107400.1	Wheat	plastid	81.2	83.51
TraesCS4A01G206400.1	Wheat	plastid	81.2	83.51
Bra011884.1-P	Field mustard	plastid	85.46	83.37
TraesCS4B01G109900.1	Wheat	plastid	80.95	83.25
CDY42595	Canola	plastid	82.96	82.96
CDY72367	Canola	plastid	65.66	82.65
Zm00001d053015_P001	Maize	plastid	81.45	82.49
Bra033590.1-P	Field mustard	plastid	23.31	79.49
KRG90928	Soybean	nucleus, plastid	77.19	79.38
KRH35847	Soybean	endoplasmic reticulum	77.19	78.97
KRH26114	Soybean	plastid	73.68	77.78
Solyc10g054390.1.1	Tomato	mitochondrion	24.56	72.06
KRH73948	Soybean	cytosol, endoplasmic reticulum	52.88	59.1
KRH14187	Soybean	cytosol, nucleus	52.38	58.54
KRH72603	Soybean	nucleus	51.63	57.54
KRH67855	Soybean	endoplasmic reticulum	51.38	57.26
KRH16972	Soybean	nucleus	51.38	57.26
KRH32664	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	49.37	55.03
KRH20036	Soybean	cytosol, mitochondrion, nucleus	49.37	55.03

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	MapMan:1.2.5
EntrezGene:100818383	EntrezGene:100818915	MapMan:3.12.2	Gene3D:3.20.20.70	EMBL:ACUP02006798	InterPro:Aldolase_I_AS
InterPro:Aldolase_TIM	InterPro:FBA_I	EnsemblPlantsGene:GLYMA_11G111400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004332
GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	UniProt:I1LJ68	InterPro:IPR013785
ProteinID:KRH29349.1	EnsemblPlants:KRH29352	ProteinID:KRH29352	ProteinID:KRH29352.1	PFAM:PF00274	ScanProsite:PS00158
PANTHER:PTHR11627	PANTHER:PTHR11627:SF16	MetaCyc:PWY-1042	MetaCyc:PWY-1861	MetaCyc:PWY-5484	MetaCyc:PWY-6142
MetaCyc:PWY-7385	SUPFAM:SSF51569	UniParc:UPI0001CAB91E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:8496826..8499771

Molecular Weight (calculated)

42954.2 Da

IEP (calculated)

8.391

GRAVY (calculated)

-0.158

Length

399 amino acids

Sequence
(BLAST)

001: MASASASLLK SSLVLDKSEW VKGQTLRQPS AASVVRCNPT TPSGLTIRAG SYADELVKTA KTVASPGRGI LAMDESNATC GKRLASIGLE NTEANRQAYR
101: TLLVTVPGLG QYISGAILFE ETLYQSTTDG RKIVDVLLEQ NIVPGIKVDK GLVPLAGSND ESWCQGLDGL ASRSAAYYQQ GARFAKWRTV VSIPNGPSAL
201: AVKEAAWGLA RYAAIAQDNG LVPIVEPEIL LDGEHGIDRT FEVAKKVWAE VFFYLAENNV LFEGILLKPS MVTPGAESKD KASPQTVADY TLKLLHRRIP
301: PAVPGIMFLS GGQSEVEATL NLNAMNQSPN PWHVSFSYAR ALQNTALKTW GGRPENVKAA QDALLFRAKS NSLAQLGKYT GEGESEEAKK ELFVKGYSY

Best Arabidopsis Sequence Match ( AT4G38970.1 )
(BLAST)

001: MASTSLLKAS PVLDKSEWVK GQSVLFRQPS SASVVLRNRA TSLTVRAASS YADELVKTAK TIASPGRGIL AMDESNATCG KRLDSIGLEN TEANRQAFRT
101: LLVSAPGLGQ YVSGAILFEE TLYQSTTEGK KMVDVLVEQN IVPGIKVDKG LVPLVGSNNE SWCQGLDGLS SRTAAYYQQG ARFAKWRTVV SIPNGPSALA
201: VKEAAWGLAR YAAISQDSGL VPIVEPEILL DGEHDIDRTY DVAEKVWAEV FFYLAQNNVM FEGILLKPSM VTPGAESKDR ATPEQVAAYT LKLLRNRVPP
301: AVPGIMFLSG GQSEVEATLN LNAMNQAPNP WHVSFSYARA LQNTCLKTWG GRPENVNAAQ TTLLARAKAN SLAQLGKYTG EGESEEAKEG MFVKGYTY

Arabidopsis Description

FBA2Fructose-bisphosphate aldolase [Source:UniProtKB/TrEMBL;Acc:A0A178UW98]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.