CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20443193
nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 20443193 doi

N Ahsan, Y Nanjo, H Sawada, Y Kohno, S Komatsu

National Institute of Crop Science, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29349	Soybean	plastid	92.66	91.73
KRH29352	Soybean	plastid	92.66	91.73
KRH24377	Soybean	plastid	92.15	91.46
VIT_04s0023g03010.t01	Wine grape	plastid	89.87	89.65
VIT_03s0038g00670.t01	Wine grape	plastid	88.61	87.94
Solyc02g062340.2.1	Tomato	plastid	87.34	87.34
PGSC0003DMT400031351	Potato	cytosol, extracellular, plastid	86.84	86.84
GSMUA_Achr5P19920_001	Banana	plasma membrane, plastid	85.32	86.19
CDX82019	Canola	plastid	86.33	85.68
Os11t0171300-01	Rice	extracellular, plastid	84.05	85.57
GSMUA_Achr6P17900_001	Banana	plastid	83.54	84.83
GSMUA_Achr8P17280_001	Banana	plastid	83.29	84.79
CDX99600	Canola	plastid	83.54	84.62
CDY15898	Canola	plastid	83.54	84.62
Bra030303.1-P	Field mustard	plastid	83.54	84.62
EES09371	Sorghum	plastid	83.04	84.54
Bra031181.1-P	Field mustard	plastid	85.57	84.5
TraesCS5D01G122700.1	Wheat	plastid	82.28	84.42
TraesCS5A01G108000.1	Wheat	plastid	82.28	84.42
CDY12112	Canola	plastid	81.77	84.33
Zm00001d023559_P001	Maize	plastid	82.78	84.28
TraesCS5B01G115300.1	Wheat	golgi	82.03	84.16
CDX90302	Canola	plastid	81.52	84.07
TraesCS4A01G206400.1	Wheat	plastid	82.53	84.02
TraesCS4D01G107400.1	Wheat	plastid	82.53	84.02
CDY22401	Canola	plastid	83.54	83.97
HORVU5Hr1G032980.1	Barley	plastid	81.77	83.9
HORVU4Hr1G019570.1	Barley	plastid	82.28	83.76
Bra010717.1-P	Field mustard	plastid	83.29	83.72
AT4G38970.1	Thale cress	plastid	84.3	83.67
EES16731	Sorghum	plastid	82.28	83.55
CDX72725	Canola	plastid	83.04	83.46
AT2G21330.1	Thale cress	plastid	84.3	83.46
TraesCS4B01G109900.1	Wheat	plastid	81.77	83.25
Bra033589.1-P	Field mustard	plastid	82.28	82.7
Zm00001d053015_P001	Maize	plastid	82.28	82.49
Bra011884.1-P	Field mustard	plastid	84.56	81.66
CDY42595	Canola	plastid	82.28	81.45
CDY72367	Canola	plastid	64.56	80.44
KRG90928	Soybean	nucleus, plastid	77.22	78.61
KRH35847	Soybean	endoplasmic reticulum	77.22	78.21
KRH26114	Soybean	plastid	73.67	76.98
Bra033590.1-P	Field mustard	plastid	22.03	74.36
Solyc10g054390.1.1	Tomato	mitochondrion	24.56	71.32
KRH73948	Soybean	cytosol, endoplasmic reticulum	52.66	58.26
KRH14187	Soybean	cytosol, nucleus	52.15	57.7
KRH67855	Soybean	endoplasmic reticulum	51.9	57.26
KRH72603	Soybean	nucleus	50.63	55.87
KRH16972	Soybean	nucleus	50.63	55.87
KRH20036	Soybean	cytosol, mitochondrion, nucleus	50.13	55.31
KRH32664	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	49.87	55.03

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	MapMan:1.2.5
EntrezGene:100798677	MapMan:3.12.2	Gene3D:3.20.20.70	EMBL:ACUP02002140	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM
InterPro:FBA_I	EnsemblPlantsGene:GLYMA_04G008300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004332	GO:GO:0005975
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	UniProt:I1JSJ3	InterPro:IPR013785	EnsemblPlants:KRH60768
ProteinID:KRH60768	ProteinID:KRH60768.1	PFAM:PF00274	ScanProsite:PS00158	PANTHER:PTHR11627	PANTHER:PTHR11627:SF16
MetaCyc:PWY-1042	MetaCyc:PWY-1861	MetaCyc:PWY-5484	MetaCyc:PWY-6142	MetaCyc:PWY-7385	SUPFAM:SSF51569
UniParc:UPI0002339C33	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:632922..635094

Molecular Weight (calculated)

42570.9 Da

IEP (calculated)

6.775

GRAVY (calculated)

-0.097

Length

395 amino acids

Sequence
(BLAST)

001: MASASATLLK SSPVLDKCEW VKGQTLRQPL VRCNPSSASA LTIKAASYAD ELVKTAKTVA SPGRGILAMD ESNATCGKRL ASIGLENTEA NRQAYRTLLV
101: TVPGLGEYIS GAILFEETLY QSTVDGRKIV DVLVDQNIVP GIKVDKGLVP LAGSNDESWC QGLDGLASRS AAYYQQGARF AKWRTVVSIP NGPSALAVKE
201: AAWGLARYAA ISQENGLVPI VEPEILLDGE HGIDRTFEVA QKVWSEVFFY LAENNVLLEG ILLKPSMVTP GAESKDKATP LQVADYTLKL LHRRIPPAVP
301: GIMFLSGGQS EVEATLNLNA MNQSPNPWHV SFSYARALQN TCLKTWGGLP ENVKAAQDAL LFRAKSNSLA QLGKYTAEGE SEEATRGMFV KGYSY

Best Arabidopsis Sequence Match ( AT2G21330.1 )
(BLAST)

001: MASSTATMLK ASPVKSDWVK GQSLLLRQPS SVSAIRSHVA PSALTVRAAS AYADELVKTA KTIASPGHGI MAMDESNATC GKRLASIGLE NTEANRQAYR
101: TLLVSAPGLG QYISGAILFE ETLYQSTTDG KKMVDVLVEQ NIVPGIKVDK GLVPLVGSYD ESWCQGLDGL ASRTAAYYQQ GARFAKWRTV VSIPNGPSAL
201: AVKEAAWGLA RYAAISQDSG LVPIVEPEIM LDGEHGIDRT YDVAEKVWAE VFFYLAQNNV MFEGILLKPS MVTPGAEATD RATPEQVASY TLKLLRNRIP
301: PAVPGIMFLS GGQSELEATL NLNAMNQAPN PWHVSFSYAR ALQNTCLKTW GGKEENVKAA QDILLARAKA NSLAQLGKYT GEGESEEAKE GMFVKGYTY

Arabidopsis Description

FBA1Fructose-bisphosphate aldolase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJU4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.