Factsheet for TraesCS4D01G107400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 18071923
plastid: 19643044
plastid: 22160430
plastid: 22736107
golgi: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19643044 doi

DY Hou, H Xu, GY Du, JT Lin, M Duan, AG Guo

College of Life Science, Northwest A&F University, Yangling, Shaanxi 712100, P. R. China.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G206400.1	Wheat	plastid	99.48	99.48
HORVU4Hr1G019570.1	Barley	plastid	99.48	99.48
TraesCS4B01G109900.1	Wheat	plastid	98.71	98.71
TraesCS5D01G122700.1	Wheat	plastid	93.3	94.03
Os11t0171300-01	Rice	extracellular, plastid	93.04	93.04
EES09371	Sorghum	plastid	92.01	92.01
Zm00001d053015_P001	Maize	plastid	89.69	88.32
GSMUA_Achr6P17900_001	Banana	plastid	86.6	86.38
VIT_04s0023g03010.t01	Wine grape	plastid	86.08	84.34
GSMUA_Achr8P17280_001	Banana	plastid	84.28	84.28
VIT_03s0038g00670.t01	Wine grape	plastid	85.82	83.67
PGSC0003DMT400008103	Potato	cytosol, extracellular, plastid	85.05	83.12
Solyc01g110360.2.1	Tomato	plastid	85.05	83.12
GSMUA_Achr5P19920_001	Banana	plasma membrane, plastid	83.51	82.86
CDX90302	Canola	plastid	81.7	82.77
CDY12112	Canola	plastid	81.7	82.77
KRH60768	Soybean	plastid	84.02	82.53
Solyc02g084440.2.1	Tomato	plastid	83.25	82.4
CDY22401	Canola	plastid	82.73	81.68
CDX82019	Canola	plastid	83.76	81.66
CDY15898	Canola	plastid	81.96	81.54
CDX99600	Canola	plastid	81.96	81.54
Bra030303.1-P	Field mustard	plastid	81.96	81.54
AT2G21330.1	Thale cress	plastid	83.76	81.45
CDX72725	Canola	plastid	82.47	81.42
Bra031181.1-P	Field mustard	plastid	83.76	81.25
KRH29349	Soybean	plastid	83.51	81.2
KRH29352	Soybean	plastid	83.51	81.2
Bra010717.1-P	Field mustard	plastid	82.22	81.17
KRH24377	Soybean	plastid	83.25	81.16
AT4G38970.1	Thale cress	plastid	83.25	81.16
PGSC0003DMT400009127	Potato	plastid	82.47	81.01
Bra033589.1-P	Field mustard	plastid	81.7	80.66
CDY42595	Canola	plastid	82.73	80.45
Bra011884.1-P	Field mustard	plastid	83.76	79.46
CDY72367	Canola	plastid	63.66	77.92
TraesCS3D01G026400.1	Wheat	plastid	73.97	74.16
Bra033590.1-P	Field mustard	plastid	20.36	67.52
TraesCS3D01G383700.1	Wheat	golgi	50.0	54.19
TraesCS3D01G384000.1	Wheat	cytosol, golgi	49.74	53.91
TraesCS7D01G377400.1	Wheat	cytosol, golgi	49.74	53.61
TraesCS3D01G384100.2	Wheat	cytosol	50.26	53.28

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	MapMan:1.2.5
MapMan:3.12.2	Gene3D:3.20.20.70	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM	InterPro:FBA_I	GO:GO:0003674
GO:GO:0003824	GO:GO:0004332	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	InterPro:IPR013785
PFAM:PF00274	ScanProsite:PS00158	PANTHER:PTHR11627	PANTHER:PTHR11627:SF36	SUPFAM:SSF51569	EnsemblPlantsGene:TraesCS4D01G107400
EnsemblPlants:TraesCS4D01G107400.1	TIGR:cd00948	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:85590936..85593478

Molecular Weight (calculated)

41977.2 Da

IEP (calculated)

5.976

GRAVY (calculated)

-0.148

Length

388 amino acids

Sequence
(BLAST)

001: MASATLLKSS FLPKKAEWGA TRQAAAPKPM TVSMVVRASA YADELVKTAK TIASPGRGIL AMDESNATCG KRLASIGLEN TEANRQAYRT LLVTPPGLGN
101: YISGAILFEE TLYQSTVDGK KIVDILVEQG IVPGIKVDKG LVPLVGSNDE SWCQGLDGLA SREAAYYQQG ARFAKWRTVV SIPNGPSELA VKEAAWGLAR
201: YAAISQDNGL VPIVEPEIML DGEHGIERTF EVAQKVWAET FYYMAQNNVM FEGILLKPSM VTPGAECKDR ATPEEVASYT LKLLQRRIPP SVPGIMFLSG
301: GQSEVEATLN LNAMNQAPNP WHVSFSYARA LQNTCLKTWG GRPENVAAAQ EALLLRAKAN SLAQLGKYTS DGEAAEASEN MFVKNYSY

Best Arabidopsis Sequence Match ( AT4G38970.1 )
(BLAST)

001: MASTSLLKAS PVLDKSEWVK GQSVLFRQPS SASVVLRNRA TSLTVRAASS YADELVKTAK TIASPGRGIL AMDESNATCG KRLDSIGLEN TEANRQAFRT
101: LLVSAPGLGQ YVSGAILFEE TLYQSTTEGK KMVDVLVEQN IVPGIKVDKG LVPLVGSNNE SWCQGLDGLS SRTAAYYQQG ARFAKWRTVV SIPNGPSALA
201: VKEAAWGLAR YAAISQDSGL VPIVEPEILL DGEHDIDRTY DVAEKVWAEV FFYLAQNNVM FEGILLKPSM VTPGAESKDR ATPEQVAAYT LKLLRNRVPP
301: AVPGIMFLSG GQSEVEATLN LNAMNQAPNP WHVSFSYARA LQNTCLKTWG GRPENVNAAQ TTLLARAKAN SLAQLGKYTG EGESEEAKEG MFVKGYTY

Arabidopsis Description

FBA2Fructose-bisphosphate aldolase [Source:UniProtKB/TrEMBL;Acc:A0A178UW98]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.