Factsheet for Solyc02g084440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009127	Potato	plastid	98.72	97.97
Solyc01g110360.2.1	Tomato	plastid	92.6	91.44
Solyc02g062340.2.1	Tomato	plastid	91.58	90.89
VIT_04s0023g03010.t01	Wine grape	plastid	90.82	89.9
VIT_03s0038g00670.t01	Wine grape	plastid	90.05	88.69
CDY12112	Canola	plastid	86.22	88.25
CDX90302	Canola	plastid	85.97	87.99
AT4G38970.1	Thale cress	plastid	89.29	87.94
Bra010717.1-P	Field mustard	plastid	87.76	87.53
CDY22401	Canola	plastid	87.5	87.28
CDX82019	Canola	plastid	88.52	87.19
CDX72725	Canola	plastid	87.24	87.02
Bra031181.1-P	Field mustard	plastid	88.27	86.5
Bra033589.1-P	Field mustard	plastid	86.22	86.01
CDX99600	Canola	plastid	85.46	85.9
CDY15898	Canola	plastid	85.46	85.9
Bra030303.1-P	Field mustard	plastid	85.46	85.9
AT2G21330.1	Thale cress	plastid	87.24	85.71
GSMUA_Achr5P19920_001	Banana	plasma membrane, plastid	85.46	85.68
Bra011884.1-P	Field mustard	plastid	88.78	85.09
Os11t0171300-01	Rice	extracellular, plastid	84.18	85.05
CDY42595	Canola	plastid	86.48	84.96
TraesCS5A01G108000.1	Wheat	plastid	83.42	84.94
TraesCS5D01G122700.1	Wheat	plastid	83.42	84.94
TraesCS5B01G115300.1	Wheat	golgi	83.16	84.68
GSMUA_Achr6P17900_001	Banana	plastid	83.93	84.58
HORVU5Hr1G032980.1	Barley	plastid	82.91	84.42
CDY72367	Canola	plastid	68.11	84.23
EES09371	Sorghum	plastid	83.16	84.02
GSMUA_Achr8P17280_001	Banana	plastid	83.16	84.02
TraesCS4A01G206400.1	Wheat	plastid	82.65	83.51
HORVU4Hr1G019570.1	Barley	plastid	82.4	83.25
TraesCS4D01G107400.1	Wheat	plastid	82.4	83.25
TraesCS4B01G109900.1	Wheat	plastid	82.4	83.25
Zm00001d053015_P001	Maize	plastid	82.91	82.49
Zm00001d023559_P001	Maize	plastid	81.63	82.47
EES16731	Sorghum	plastid	81.63	82.26
Solyc05g008600.2.1	Tomato	plastid	78.06	77.47
Bra033590.1-P	Field mustard	plastid	22.7	76.07
Solyc10g054390.1.1	Tomato	mitochondrion	25.0	72.06
Solyc07g065900.2.1	Tomato	nucleus	52.04	57.14
Solyc10g054340.1.1	Tomato	plastid	15.05	55.66
Solyc10g083570.1.1	Tomato	extracellular	50.26	55.03
Solyc09g009260.2.1	Tomato	extracellular, nucleus, plastid	50.0	54.75

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	MapMan:1.2.5
MapMan:3.12.2	Gene3D:3.20.20.70	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM	InterPro:FBA_I	GO:GO:0003674
GO:GO:0003824	GO:GO:0004332	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016829
InterPro:IPR013785	UniProt:K4BAW0	PFAM:PF00274	ScanProsite:PS00158	PANTHER:PTHR11627	PANTHER:PTHR11627:SF22
SUPFAM:SSF51569	EnsemblPlantsGene:Solyc02g084440.2	EnsemblPlants:Solyc02g084440.2.1	UniParc:UPI0002768A74	:	:

Description

Fructose-bisphosphate aldolase [Source:UniProtKB/TrEMBL;Acc:K4BAW0]

Coordinates

chr2:-:47533192..47535697

Molecular Weight (calculated)

42399.8 Da

IEP (calculated)

8.167

GRAVY (calculated)

-0.117

Length

392 amino acids

Sequence
(BLAST)

001: MASASLLKTS PVLDKTEFVK GQSLRLPSVS VRCQPSALTV RASSYADELV KTAKTIASPG RGILAMDESN ATCGKRLASI GMENTEANRQ AFRTLLVSVP
101: GLGEYISGAI LFEETLYQST VEGKKMVDVL VEQNIVPGIK VDKGLVPLAG SNNESWCQGL DGLASRSAAY YQQGARFAKW RTVVSIPNGP SALAVKEAAW
201: GLARYAAISQ DNGLVPIVEP EILLDGEHNI DRTFEVAKQV WAEVFFYLAQ NNVMFEGILL KPSMVTPGAE CKDRATPQQV ADYTLSLLRQ RIPPAVPGIM
301: FLSGGQSEVE ATLNLNAMNQ SPNPWHVSFS YARALQNTCL KTWSGRPENV KAAQDALLVR AKANSLAQLG KYTGEGESDE AKKGMFVKGY VY

Best Arabidopsis Sequence Match ( AT4G38970.1 )
(BLAST)

001: MASTSLLKAS PVLDKSEWVK GQSVLFRQPS SASVVLRNRA TSLTVRAASS YADELVKTAK TIASPGRGIL AMDESNATCG KRLDSIGLEN TEANRQAFRT
101: LLVSAPGLGQ YVSGAILFEE TLYQSTTEGK KMVDVLVEQN IVPGIKVDKG LVPLVGSNNE SWCQGLDGLS SRTAAYYQQG ARFAKWRTVV SIPNGPSALA
201: VKEAAWGLAR YAAISQDSGL VPIVEPEILL DGEHDIDRTY DVAEKVWAEV FFYLAQNNVM FEGILLKPSM VTPGAESKDR ATPEQVAAYT LKLLRNRVPP
301: AVPGIMFLSG GQSEVEATLN LNAMNQAPNP WHVSFSYARA LQNTCLKTWG GRPENVNAAQ TTLLARAKAN SLAQLGKYTG EGESEEAKEG MFVKGYTY

Arabidopsis Description

FBA2Fructose-bisphosphate aldolase [Source:UniProtKB/TrEMBL;Acc:A0A178UW98]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.