Factsheet for Solyc05g008600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
extracellular: 22892874
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078520	Potato	extracellular, plastid	98.48	98.48
GSMUA_Achr6P09510_001	Banana	cytosol	80.0	89.77
VIT_01s0011g04350.t01	Wine grape	plastid	88.86	89.31
KRG90928	Soybean	nucleus, plastid	87.59	89.18
KRH35847	Soybean	endoplasmic reticulum	87.34	88.46
KRH26114	Soybean	plastid	84.05	87.83
GSMUA_AchrUn_...	Banana	plastid	86.33	86.99
CDY37348	Canola	plastid	84.81	86.12
Bra014340.1-P	Field mustard	plastid	84.56	85.86
CDY40400	Canola	plastid	84.56	85.86
AT2G01140.1	Thale cress	plastid	84.3	85.17
KXG32068	Sorghum	plastid	82.28	83.98
Zm00001d040084_P001	Maize	plastid	82.28	83.98
Os01t0118000-01	Rice	plastid	82.28	83.76
TraesCS3B01G025200.1	Wheat	plastid	80.51	83.03
TraesCS3D01G026400.1	Wheat	plastid	80.51	82.17
Zm00001d028395_P001	Maize	cytosol, nucleus, plastid	31.14	82.0
Zm00001d003968_P001	Maize	cytosol, nucleus, plastid	31.14	82.0
Solyc02g062340.2.1	Tomato	plastid	78.23	78.23
Solyc02g084440.2.1	Tomato	plastid	77.47	78.06
Zm00001d008491_P001	Maize	plastid	82.03	77.88
Zm00001d051622_P001	Maize	cytosol	13.16	77.61
Solyc01g110360.2.1	Tomato	plastid	77.72	77.33
TraesCS3A01G020300.1	Wheat	plastid	80.25	74.94
Solyc10g054390.1.1	Tomato	mitochondrion	23.54	68.38
HORVU3Hr1G002780.2	Barley	plastid	73.42	67.44
Solyc07g065900.2.1	Tomato	nucleus	52.41	57.98
Solyc09g009260.2.1	Tomato	extracellular, nucleus, plastid	50.38	55.59
Solyc10g083570.1.1	Tomato	extracellular	50.13	55.31
Solyc10g054340.1.1	Tomato	plastid	12.91	48.11

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	MapMan:1.2.5
MapMan:3.12.2	Gene3D:3.20.20.70	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM	InterPro:FBA_I	GO:GO:0003674
GO:GO:0003824	GO:GO:0004332	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009507
GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0010287
GO:GO:0016829	GO:GO:0046686	InterPro:IPR013785	UniProt:K4BX34	PFAM:PF00274	ScanProsite:PS00158
PANTHER:PTHR11627	PANTHER:PTHR11627:SF8	SUPFAM:SSF51569	EnsemblPlantsGene:Solyc05g008600.2	EnsemblPlants:Solyc05g008600.2.1	UniParc:UPI00027664AA
SEG:seg	:	:	:	:	:

Description

Fructose-bisphosphate aldolase [Source:UniProtKB/TrEMBL;Acc:K4BX34]

Coordinates

chr5:-:2916906..2920232

Molecular Weight (calculated)

43069.4 Da

IEP (calculated)

9.145

GRAVY (calculated)

-0.254

Length

395 amino acids

Sequence
(BLAST)

001: MASSSLVKLN ASSSSWIGQQ SFNQRSGSSC RLPVSNRRVS VIRAAGSYTD ELIKTAKTIA SPGRGILAID ESNATAGKRL ASIGLDNTEA NRQAYRQLLL
101: TTPGLGDYIS GSILFEETLF QSTTDGKKFV DVLRDQKIVP GIKVDKGLVP LPGSNNESWC QGLDGLASRS AEYYKQGARF AKWRTVVSIP CGPSALAVKE
201: AAWGLARYAA ISQDNGLVPI VEPEILLDGD HPIERTLEVA ERVWAEVFYY LAENNVVFEG ILLKPSMVTP GAEHKEKATP ETIAKYTLTM LRRRVPPAVP
301: GIMFLSGGQS EVEATLNLHE MNQSPNPWHV SFSYARALQN TVLKTWQGRP ENVDAAQRAL LIRAKANSLA QLGKYSAEGE SEEAKKGMFV KGYTY

Best Arabidopsis Sequence Match ( AT2G01140.1 )
(BLAST)

001: MASASFVKPN TLSSPWIGQR SFAHTSASSS PPPRVSFAIR AGAYSDELVK TAKSIASPGR GILAIDESNA TCGKRLASIG LDNTEDNRQA YRQLLLTTPG
101: LGDYISGSIL FEETLYQSTK DGKTFVDCLR DANIVPGIKV DKGLSPLAGS NEESWCQGLD GLASRSAEYY KQGARFAKWR TVVSVPCGPS ALAVKEAAWG
201: LARYAAISQD NGLVPIVEPE ILLDGDHPIE RTLEVAEKVW SEVFFYLAQN NVMFEGILLK PSMVTPGAEH KNKASPETVA DFTLTMLKRR VPPAVPGIMF
301: LSGGQSEAEA TLNLNAMNQS PNPWHVSFSY ARALQNSVLR TWQGKPEKIE ASQKALLVRA KANSLAQLGK YSAEGENEDA KKGMFVKGYT Y

Arabidopsis Description

FBA3Fructose-bisphosphate aldolase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU52]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.