Factsheet for PGSC0003DMT400078520

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008600.2.1	Tomato	plastid	98.48	98.48
GSMUA_Achr6P09510_001	Banana	cytosol	79.49	89.2
KRG90928	Soybean	nucleus, plastid	87.09	88.66
VIT_01s0011g04350.t01	Wine grape	plastid	87.85	88.3
KRH35847	Soybean	endoplasmic reticulum	86.84	87.95
KRH26114	Soybean	plastid	83.54	87.3
GSMUA_AchrUn_...	Banana	plastid	85.57	86.22
CDY37348	Canola	plastid	84.3	85.6
Bra014340.1-P	Field mustard	plastid	84.05	85.35
CDY40400	Canola	plastid	84.05	85.35
AT2G01140.1	Thale cress	plastid	84.3	85.17
KXG32068	Sorghum	plastid	82.03	83.72
Zm00001d040084_P001	Maize	plastid	82.03	83.72
Os01t0118000-01	Rice	plastid	81.77	83.25
TraesCS3B01G025200.1	Wheat	plastid	80.51	83.03
Zm00001d028395_P001	Maize	cytosol, nucleus, plastid	31.39	82.67
Zm00001d003968_P001	Maize	cytosol, nucleus, plastid	31.39	82.67
TraesCS3D01G026400.1	Wheat	plastid	80.51	82.17
PGSC0003DMT400031351	Potato	cytosol, extracellular, plastid	79.24	79.24
PGSC0003DMT400008103	Potato	cytosol, extracellular, plastid	78.48	78.09
PGSC0003DMT400009127	Potato	plastid	77.97	77.97
Zm00001d051622_P001	Maize	cytosol	13.16	77.61
Zm00001d008491_P001	Maize	plastid	81.52	77.4
TraesCS3A01G020300.1	Wheat	plastid	80.25	74.94
HORVU3Hr1G002780.2	Barley	plastid	73.42	67.44
PGSC0003DMT400057332	Potato	cytosol	51.39	58.84
PGSC0003DMT400072632	Potato	cytosol	50.13	55.31
PGSC0003DMT400006894	Potato	cytosol	50.13	55.31

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	MapMan:1.2.5
MapMan:3.12.2	Gene3D:3.20.20.70	ProteinID:ABB02640	ProteinID:ABB02640.1	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM
EMBL:DQ222509	InterPro:FBA_I	GO:GO:0003674	GO:GO:0003824	GO:GO:0004332	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005975	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009987	GO:GO:0010287	GO:GO:0016829	GO:GO:0046686	InterPro:IPR013785
UniProt:M1D0A6	PFAM:PF00274	EnsemblPlantsGene:PGSC0003DMG400030565	PGSC:PGSC0003DMG400030565	EnsemblPlants:PGSC0003DMT400078520	ScanProsite:PS00158
PANTHER:PTHR11627	PANTHER:PTHR11627:SF8	SUPFAM:SSF51569	UniParc:UPI0002965E7A	SEG:seg	:

Description

Fructose-bisphosphate aldolase [Source:PGSC_GENE;Acc:PGSC0003DMG400030565]

Coordinates

chr5:+:3707278..3710672

Molecular Weight (calculated)

42913.1 Da

IEP (calculated)

8.936

GRAVY (calculated)

-0.236

Length

395 amino acids

Sequence
(BLAST)

001: MASSSLVKLN ASSSSWIGQQ SFNQRSGSSC RLPVSNRRVS VVRAAGSYTD ELIKTAKTIA SPGRGILAID ESNATAGKRL ASIGLDNTEA NRQAYRQLLL
101: TTPGLGDYIS GSILFEETLF QSTTDGKKFV DVLRDQNIVP GIKVDKGLVP LPGSNNESWC QGLDGLASRS AEYYKQGARF AKWRTVVSIP CGPSALAVKE
201: AAWGLARYAA ISQDNGLVPI VEPEILLDGD HPIEQTLEVA ERVWAEVFYY LAENNVVFEG ILLKPSMVTP GAEHKEKATP DTIAKYTLTM LKRRVPPAVP
301: GIMFLSGGQS EVEATLNLHA MNQSPNPWHV SFSYARALQN TVLKTWQGRP ENVDAAQRAL LIRAKANSLA QLGKYSAEGE SEEAKKGMFV KGYTY

Best Arabidopsis Sequence Match ( AT2G01140.1 )
(BLAST)

001: MASASFVKPN TLSSPWIGQR SFAHTSASSS PPPRVSFAIR AGAYSDELVK TAKSIASPGR GILAIDESNA TCGKRLASIG LDNTEDNRQA YRQLLLTTPG
101: LGDYISGSIL FEETLYQSTK DGKTFVDCLR DANIVPGIKV DKGLSPLAGS NEESWCQGLD GLASRSAEYY KQGARFAKWR TVVSVPCGPS ALAVKEAAWG
201: LARYAAISQD NGLVPIVEPE ILLDGDHPIE RTLEVAEKVW SEVFFYLAQN NVMFEGILLK PSMVTPGAEH KNKASPETVA DFTLTMLKRR VPPAVPGIMF
301: LSGGQSEAEA TLNLNAMNQS PNPWHVSFSY ARALQNSVLR TWQGKPEKIE ASQKALLVRA KANSLAQLGK YSAEGENEDA KKGMFVKGYT Y

Arabidopsis Description

FBA3Fructose-bisphosphate aldolase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU52]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.