CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26114	Soybean	plastid	96.39	98.94
KRH35847	Soybean	endoplasmic reticulum	99.23	98.72
VIT_01s0011g04350.t01	Wine grape	plastid	93.04	91.86
GSMUA_Achr6P09510_001	Banana	cytosol	82.99	91.48
Solyc05g008600.2.1	Tomato	plastid	89.18	87.59
Os01t0118000-01	Rice	plastid	87.37	87.37
PGSC0003DMT400078520	Potato	extracellular, plastid	88.66	87.09
KXG32068	Sorghum	plastid	86.86	87.08
Zm00001d040084_P001	Maize	plastid	86.86	87.08
Zm00001d003968_P001	Maize	cytosol, nucleus, plastid	33.51	86.67
Zm00001d028395_P001	Maize	cytosol, nucleus, plastid	33.51	86.67
CDY40400	Canola	plastid	86.86	86.63
CDY37348	Canola	plastid	86.86	86.63
Bra014340.1-P	Field mustard	plastid	86.86	86.63
GSMUA_AchrUn_...	Banana	plastid	87.37	86.48
TraesCS3B01G025200.1	Wheat	plastid	85.05	86.16
AT2G01140.1	Thale cress	plastid	86.6	85.93
TraesCS3D01G026400.1	Wheat	plastid	85.57	85.79
Zm00001d008491_P001	Maize	plastid	87.11	81.25
TraesCS3A01G020300.1	Wheat	plastid	85.31	78.25
Zm00001d051622_P001	Maize	cytosol	13.4	77.61
KRH60768	Soybean	plastid	78.61	77.22
KRH29352	Soybean	plastid	79.38	77.19
KRH29349	Soybean	plastid	79.38	77.19
KRH24377	Soybean	plastid	78.87	76.88
HORVU3Hr1G002780.2	Barley	plastid	77.58	70.0
KRH73948	Soybean	cytosol, endoplasmic reticulum	52.32	56.86
KRH67855	Soybean	endoplasmic reticulum	52.06	56.42
KRH14187	Soybean	cytosol, nucleus	51.8	56.3
KRH20036	Soybean	cytosol, mitochondrion, nucleus	51.03	55.31
KRH32664	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	50.77	55.03
KRH16972	Soybean	nucleus	50.52	54.75
KRH72603	Soybean	nucleus	50.0	54.19

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	MapMan:1.2.5
MapMan:3.12.2	Gene3D:3.20.20.70	EMBL:ACUP02012653	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM	InterPro:FBA_I
EnsemblPlantsGene:GLYMA_20G122500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004332	GO:GO:0005975	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016829	UniProt:I1NFR3	InterPro:IPR013785	EnsemblPlants:KRG90928	ProteinID:KRG90928
ProteinID:KRG90928.1	PFAM:PF00274	ScanProsite:PS00158	PANTHER:PTHR11627	PANTHER:PTHR11627:SF8	MetaCyc:PWY-1042
MetaCyc:PWY-1861	MetaCyc:PWY-5484	MetaCyc:PWY-6142	MetaCyc:PWY-7385	SUPFAM:SSF51569	UniParc:UPI0001CABBCD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:36522869..36525644

Molecular Weight (calculated)

42419.6 Da

IEP (calculated)

8.549

GRAVY (calculated)

-0.258

Length

388 amino acids

Sequence
(BLAST)

001: MAMASAKLNT LSSQWIAHNS FSPRRGSSSR RVSLPIRASS YQHELVQTAK SIASPGRGIL AIDESNATCG KRLASIGLDN TEVNRQAYRQ LLLTTPGLGE
101: YISGAILFEE TLYQSTTDGN KFVDCLRDQN IVPGIKVDKG LVPLPGSNNE SWCQGLDGLA SRSAEYYKQG ARFAKWRTVV SIPCGPSALA VKEAAWGLAR
201: YAAISQDNGL VPIVEPEILL DGDHPIERTL EVAEKVWSEV FFYLAENNVL FEGILLKPSM VTPGAEHKEK ASPETIAKYT LTMLRRRVPP AVPGIMFLSG
301: GQSEVEATLN LNAMNQSPNP WHVSFSYARA LQNTVLKTWQ GHPENVEAAQ KSLLVRAKAN SLAQLGRYSA EGESEEAKKG MFVKGYTY

Best Arabidopsis Sequence Match ( AT2G01140.1 )
(BLAST)

001: MASASFVKPN TLSSPWIGQR SFAHTSASSS PPPRVSFAIR AGAYSDELVK TAKSIASPGR GILAIDESNA TCGKRLASIG LDNTEDNRQA YRQLLLTTPG
101: LGDYISGSIL FEETLYQSTK DGKTFVDCLR DANIVPGIKV DKGLSPLAGS NEESWCQGLD GLASRSAEYY KQGARFAKWR TVVSVPCGPS ALAVKEAAWG
201: LARYAAISQD NGLVPIVEPE ILLDGDHPIE RTLEVAEKVW SEVFFYLAQN NVMFEGILLK PSMVTPGAEH KNKASPETVA DFTLTMLKRR VPPAVPGIMF
301: LSGGQSEAEA TLNLNAMNQS PNPWHVSFSY ARALQNSVLR TWQGKPEKIE ASQKALLVRA KANSLAQLGK YSAEGENEDA KKGMFVKGYT Y

Arabidopsis Description

FBA3Fructose-bisphosphate aldolase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU52]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.