CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32664	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	98.32	98.32
KRH67855	Soybean	endoplasmic reticulum	87.43	87.43
KRH72603	Soybean	nucleus	84.64	84.64
KRH16972	Soybean	nucleus	84.64	84.64
Bra009517.1-P	Field mustard	cytosol	84.36	84.12
VIT_08s0007g03830.t01	Wine grape	cytosol, extracellular	84.08	84.08
Solyc09g009260.2.1	Tomato	extracellular, nucleus, plastid	83.52	83.52
TraesCS3A01G391500.1	Wheat	cytosol, golgi, unclear	83.24	83.24
Solyc10g083570.1.1	Tomato	extracellular	82.96	82.96
TraesCS3B01G423200.1	Wheat	cytosol	82.96	82.96
PGSC0003DMT400072632	Potato	cytosol	82.68	82.68
TraesCS3A01G391100.1	Wheat	golgi	82.68	82.68
PGSC0003DMT400006894	Potato	cytosol	82.4	82.4
Os01t0905800-01	Rice	cytosol, extracellular	82.4	82.4
TraesCS3B01G422900.1	Wheat	cytosol	78.77	82.22
TraesCS3D01G384000.1	Wheat	cytosol, golgi	82.12	82.12
TraesCS3D01G383700.1	Wheat	golgi	81.84	81.84
EES06798	Sorghum	cytosol	81.01	81.01
TraesCS3D01G384100.2	Wheat	cytosol	82.4	80.6
EES04064	Sorghum	cytosol	79.61	80.28
Zm00001d042453_P001	Maize	plasma membrane	79.33	80.0
GSMUA_Achr11P...	Banana	cytosol	43.3	79.9
Os10t0163340-01	Rice	cytosol, extracellular, plasma membrane, plastid	79.89	79.89
Zm00001d012103_P001	Maize	extracellular, plasma membrane	78.77	79.44
HORVU3Hr1G088570.1	Barley	mitochondrion, plasma membrane	83.52	78.89
Os08t0120600-01	Rice	cytosol, plasma membrane, plastid	79.61	78.73
GSMUA_Achr11P...	Banana	cytosol	28.49	77.86
HORVU3Hr1G088540.1	Barley	cytosol, mitochondrion, plastid	82.96	76.74
AT5G03690.1	Thale cress	mitochondrion	84.08	76.59
Os05t0402700-01	Rice	extracellular	70.95	76.28
KRH14187	Soybean	cytosol, nucleus	75.42	75.63
KRH73948	Soybean	cytosol, endoplasmic reticulum	75.14	75.35
HORVU3Hr1G088500.2	Barley	cytosol	46.37	74.11
TraesCS5A01G009400.1	Wheat	cytosol	50.0	70.47
KRG90928	Soybean	nucleus, plastid	55.31	51.03
KRH35847	Soybean	endoplasmic reticulum	55.31	50.77
KRH60768	Soybean	plastid	55.31	50.13
KRH26114	Soybean	plastid	52.51	49.74
KRH24377	Soybean	plastid	55.03	49.5
KRH29352	Soybean	plastid	55.03	49.37
KRH29349	Soybean	plastid	55.03	49.37

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	EntrezGene:100815070
MapMan:2.1.1.2	MapMan:3.1.2.2	Gene3D:3.20.20.70	EMBL:ACUP02008226	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM
InterPro:FBA_I	EnsemblPlantsGene:GLYMA_13G151800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004332	GO:GO:0005975
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	UniProt:I1LZG1	InterPro:IPR013785	EnsemblPlants:KRH20036
ProteinID:KRH20036	ProteinID:KRH20036.1	PFAM:PF00274	ScanProsite:PS00158	PANTHER:PTHR11627	PANTHER:PTHR11627:SF24
MetaCyc:PWY-1042	MetaCyc:PWY-1861	MetaCyc:PWY-5484	MetaCyc:PWY-6142	MetaCyc:PWY-7385	SUPFAM:SSF51569
UniParc:UPI0001BA8D7A	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:26574466..26577747

Molecular Weight (calculated)

38412.0 Da

IEP (calculated)

7.076

GRAVY (calculated)

-0.197

Length

358 amino acids

Sequence
(BLAST)

001: MSSFKSKYQD ELIANATYIG TPGKGILAAD ESTGTIGKRL ASINVENVET NRRILRELLF TAPGCLECLS GVILFEETLY QKSAAGVPFV DILKKGGVLP
101: GIKVDKGTVE LAGTNGETTT QGLDDLAQRC KKYYEAGARF AKWRAVLKIG PNEPSPLSIH ENANGLARYA AICQENGLVP IVEPEILSDG PHDIAKCADV
201: TERVLAACYK ALNDHHVLLE GTLLKPNMVT PGSEAARVTA EVIAEHTVRA LQRTVPPAVP AIVFLSGGQS EEEATVNLNA MNQLKGKKPW SLTFSYGRAL
301: QQSTLKAWGG KDENIPKAQS ALLVRCKANS EATLGTYKGD ATLGEGASES LHVKDYKY

Best Arabidopsis Sequence Match ( AT2G36460.1 )
(BLAST)

001: MSSFTSKFAD ELIANAAYIG TPGKGILAAD ESTGTIGKRL ASINVENVES NRRALRELLF TTPGALPCLS GVILFEETLY QKSSDGTPFV DMLKSAGVLP
101: GIKVDKGTVE LAGTNGETTT QGLDGLGDRC KKYYEAGARF AKWRAVLKIG VNEPSQLAIH ENAYGLARYA VICQENGLVP IVEPEILVDG SHDIQKCAAV
201: TERVLAACYK ALSDHHVLLE GTLLKPNMVT PGSESAKVAP EVIAEHTVRA LQRTVPAAVP AIVFLSGGQS EEEATRNLNA MNQLKTKKPW SLSFSFGRAL
301: QQSTLKTWGG KEENVKKAQE AFLVRCKANS EATLGAYKGD AKLGEGAAES LHVKDYKY

Arabidopsis Description

FBA6Fructose-bisphosphate aldolase 6, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.