Factsheet for TraesCS3A01G391100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52930.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT3G52930.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT3G52930.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT3G52930.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT3G52930.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT3G52930.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G422900.1	Wheat	cytosol	94.97	99.13
TraesCS3D01G383700.1	Wheat	golgi	98.88	98.88
TraesCS3D01G384000.1	Wheat	cytosol, golgi	98.6	98.6
TraesCS3A01G391500.1	Wheat	cytosol, golgi, unclear	97.77	97.77
HORVU3Hr1G088540.1	Barley	cytosol, mitochondrion, plastid	99.16	91.73
Os10t0163340-01	Rice	cytosol, extracellular, plasma membrane, plastid	90.5	90.5
EES06798	Sorghum	cytosol	89.94	89.94
EES04064	Sorghum	cytosol	88.83	89.58
Zm00001d042453_P001	Maize	plasma membrane	88.55	89.3
HORVU3Hr1G088500.2	Barley	cytosol	55.87	89.29
Zm00001d012103_P001	Maize	extracellular, plasma membrane	88.27	89.01
Os01t0905800-01	Rice	cytosol, extracellular	88.83	88.83
VIT_08s0007g03830.t01	Wine grape	cytosol, extracellular	87.71	87.71
GSMUA_Achr5P25490_001	Banana	cytosol	80.45	87.54
GSMUA_Achr8P08990_001	Banana	cytosol	81.28	87.39
Os05t0402700-01	Rice	extracellular	80.73	86.79
Solyc10g083570.1.1	Tomato	extracellular	84.92	84.92
PGSC0003DMT400072632	Potato	cytosol	84.64	84.64
GSMUA_Achr8P01230_001	Banana	cytosol	74.02	83.6
Solyc09g009260.2.1	Tomato	extracellular, nucleus, plastid	83.52	83.52
KRH67855	Soybean	endoplasmic reticulum	83.52	83.52
AT2G36460.1	Thale cress	cytosol	83.52	83.52
PGSC0003DMT400006894	Potato	cytosol	82.96	82.96
Bra028543.1-P	Field mustard	cytosol	82.68	82.68
KRH20036	Soybean	cytosol, mitochondrion, nucleus	82.68	82.68
AT3G52930.1	Thale cress	cytosol	82.4	82.4
KRH16972	Soybean	nucleus	81.84	81.84
KRH32664	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	81.84	81.84
Bra009517.1-P	Field mustard	cytosol	81.56	81.34
Bra019639.1-P	Field mustard	cytosol	81.28	81.28
KRH72603	Soybean	nucleus	81.01	81.01
GSMUA_Achr8P07620_001	Banana	mitochondrion, plastid	82.12	80.55
TraesCS5A01G009400.1	Wheat	cytosol	56.7	79.92
Bra006960.1-P	Field mustard	cytosol	82.4	78.04
Bra017234.1-P	Field mustard	cytosol	72.35	75.51
AT5G03690.1	Thale cress	mitochondrion	81.01	73.79
TraesCS7A01G381100.2	Wheat	endoplasmic reticulum, mitochondrion	76.26	70.0
TraesCS5A01G108000.1	Wheat	plastid	54.19	50.39
TraesCS4A01G206400.1	Wheat	plastid	53.91	49.74
TraesCS3A01G020300.1	Wheat	plastid	55.31	46.81
Bra017233.1-P	Field mustard	nucleus, plastid	82.4	22.3

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	MapMan:2.1.1.2
MapMan:3.1.2.2	Gene3D:3.20.20.70	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM	InterPro:FBA_I	GO:GO:0003674
GO:GO:0003824	GO:GO:0004332	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	InterPro:IPR013785
PFAM:PF00274	ScanProsite:PS00158	PANTHER:PTHR11627	PANTHER:PTHR11627:SF38	SUPFAM:SSF51569	EnsemblPlantsGene:TraesCS3A01G391100
EnsemblPlants:TraesCS3A01G391100.1	TIGR:cd00948	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:639084974..639086910

Molecular Weight (calculated)

38812.4 Da

IEP (calculated)

7.269

GRAVY (calculated)

-0.229

Length

358 amino acids

Sequence
(BLAST)

001: MSAYCGKYKD ELIKNAAYIG TPGKGILAAD ESTGTIGKRF ASINVENVED NRRALRELLF CTPGALQYLS GVILFEETLY QSTKGGKPFV DILKAGNVLP
101: GIKVDKGTIE LAGTNGETTT QGFDDLGKRC AKYYEAGARF AKWRAVLKIG ATEPSQLSID QNAQGLARYA IICQENGLVP IVEPEILVDG PHDIDRCAYV
201: TEIVLAACYK ALNDQHVLLE GTLLKPNMVT PGSDAKKVAP EVIAEYTVRT LQRTVPAAVP AIVFLSGGQS EEEATLNLNA MNKLQTKKPW NLSFSFGRAL
301: QQSTLKAWSG KTENEEKART AFLVRCKANS EATLGTYKGD ATLGEGASES LHVKDYKY

Best Arabidopsis Sequence Match ( AT2G36460.1 )
(BLAST)

001: MSSFTSKFAD ELIANAAYIG TPGKGILAAD ESTGTIGKRL ASINVENVES NRRALRELLF TTPGALPCLS GVILFEETLY QKSSDGTPFV DMLKSAGVLP
101: GIKVDKGTVE LAGTNGETTT QGLDGLGDRC KKYYEAGARF AKWRAVLKIG VNEPSQLAIH ENAYGLARYA VICQENGLVP IVEPEILVDG SHDIQKCAAV
201: TERVLAACYK ALSDHHVLLE GTLLKPNMVT PGSESAKVAP EVIAEHTVRA LQRTVPAAVP AIVFLSGGQS EEEATRNLNA MNQLKTKKPW SLSFSFGRAL
301: QQSTLKTWGG KEENVKKAQE AFLVRCKANS EATLGAYKGD AKLGEGAAES LHVKDYKY

Arabidopsis Description

FBA6Fructose-bisphosphate aldolase 6, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.