CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90928	Soybean	nucleus, plastid	98.72	99.23
KRH26114	Soybean	plastid	95.13	98.15
VIT_01s0011g04350.t01	Wine grape	plastid	92.31	91.6
GSMUA_Achr6P09510_001	Banana	cytosol	82.31	91.19
Os01t0118000-01	Rice	plastid	86.92	87.37
Solyc05g008600.2.1	Tomato	plastid	88.46	87.34
KXG32068	Sorghum	plastid	86.67	87.34
Zm00001d040084_P001	Maize	plastid	86.67	87.34
Bra014340.1-P	Field mustard	plastid	86.67	86.89
CDY40400	Canola	plastid	86.67	86.89
CDY37348	Canola	plastid	86.67	86.89
PGSC0003DMT400078520	Potato	extracellular, plastid	87.95	86.84
Zm00001d028395_P001	Maize	cytosol, nucleus, plastid	33.33	86.67
Zm00001d003968_P001	Maize	cytosol, nucleus, plastid	33.33	86.67
TraesCS3B01G025200.1	Wheat	plastid	84.87	86.42
GSMUA_AchrUn_...	Banana	plastid	86.67	86.22
AT2G01140.1	Thale cress	plastid	86.41	86.19
TraesCS3D01G026400.1	Wheat	plastid	85.38	86.05
Zm00001d008491_P001	Maize	plastid	86.67	81.25
TraesCS3A01G020300.1	Wheat	plastid	85.13	78.49
Zm00001d051622_P001	Maize	cytosol	13.33	77.61
KRH60768	Soybean	plastid	78.21	77.22
KRH29352	Soybean	plastid	78.97	77.19
KRH29349	Soybean	plastid	78.97	77.19
KRH24377	Soybean	plastid	78.46	76.88
HORVU3Hr1G002780.2	Barley	plastid	77.44	70.23
KRH73948	Soybean	cytosol, endoplasmic reticulum	52.31	57.14
KRH67855	Soybean	endoplasmic reticulum	52.05	56.7
KRH14187	Soybean	cytosol, nucleus	51.79	56.58
KRH20036	Soybean	cytosol, mitochondrion, nucleus	50.77	55.31
KRH32664	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	50.51	55.03
KRH16972	Soybean	nucleus	50.51	55.03
KRH72603	Soybean	nucleus	50.0	54.47

Protein Annotations

KEGG:00010+4.1.2.13	KEGG:00030+4.1.2.13	KEGG:00051+4.1.2.13	KEGG:00680+4.1.2.13	KEGG:00710+4.1.2.13	MapMan:1.2.5
EntrezGene:100802732	MapMan:3.12.2	Gene3D:3.20.20.70	EMBL:ACUP02006703	InterPro:Aldolase_I_AS	InterPro:Aldolase_TIM
InterPro:FBA_I	EnsemblPlantsGene:GLYMA_10G268500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004332	GO:GO:0005975
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	UniProt:I1LEQ8	InterPro:IPR013785	EnsemblPlants:KRH35847
ProteinID:KRH35847	ProteinID:KRH35847.1	PFAM:PF00274	ScanProsite:PS00158	PANTHER:PTHR11627	PANTHER:PTHR11627:SF8
MetaCyc:PWY-1042	MetaCyc:PWY-1861	MetaCyc:PWY-5484	MetaCyc:PWY-6142	MetaCyc:PWY-7385	SUPFAM:SSF51569
UniParc:UPI00023CDBF2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:49112829..49115600

Molecular Weight (calculated)

42538.7 Da

IEP (calculated)

8.188

GRAVY (calculated)

-0.236

Length

390 amino acids

Sequence
(BLAST)

001: MAMAASAKLN TLSSSQWIAH NSFSPRRGSS SRRVSLPIRA SSYQHELVQT AKSIASPGRG ILAIDESNAT CGKRLASIGL DNTEVNRQAY RQLLLTTPGL
101: GEYISGAILF EETLYQSTTD GKQFVDCLCD QNIVPGIKVD KGLVPLPGSN NESWCQGLDG LASRSAEYYK QGARFAKWRT VVSIPCGPSA LAVKEAAWGL
201: ARYAAISQDN GLVPIVEPEI LLDGDHPIER TLEVAEKVWS EVFFYLAENN VLFEGILLKP SMVTPGAEHK EKASPETIAK YTLTMLRRRV PPAVPGIMFL
301: SGGQSEVEAT LNLNAMNQSP NPWHVSFSYA RALQNTVLKT WQGHPENVEA AQKSLLVRAK ANSLAQLGRY SAEGESEEAK KGMFVKGYTY

Best Arabidopsis Sequence Match ( AT2G01140.1 )
(BLAST)

001: MASASFVKPN TLSSPWIGQR SFAHTSASSS PPPRVSFAIR AGAYSDELVK TAKSIASPGR GILAIDESNA TCGKRLASIG LDNTEDNRQA YRQLLLTTPG
101: LGDYISGSIL FEETLYQSTK DGKTFVDCLR DANIVPGIKV DKGLSPLAGS NEESWCQGLD GLASRSAEYY KQGARFAKWR TVVSVPCGPS ALAVKEAAWG
201: LARYAAISQD NGLVPIVEPE ILLDGDHPIE RTLEVAEKVW SEVFFYLAQN NVMFEGILLK PSMVTPGAEH KNKASPETVA DFTLTMLKRR VPPAVPGIMF
301: LSGGQSEAEA TLNLNAMNQS PNPWHVSFSY ARALQNSVLR TWQGKPEKIE ASQKALLVRA KANSLAQLGK YSAEGENEDA KKGMFVKGYT Y

Arabidopsis Description

FBA3Fructose-bisphosphate aldolase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU52]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.