Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G65000.1 | KRH16972 | AT3G52930.1 | 21798944 |
| AT1G65000.1 | KRH72603 | AT3G52930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0039g01640.t01 | Wine grape | nucleus | 76.09 | 79.55 |
| CDY07440 | Canola | nucleus | 63.04 | 74.36 |
| AT1G65000.1 | Thale cress | cytosol, mitochondrion, nucleus | 66.3 | 73.49 |
| PGSC0003DMT400008206 | Potato | cytosol, mitochondrion, nucleus | 75.0 | 71.13 |
| PGSC0003DMT400068097 | Potato | cytosol, mitochondrion, nucleus | 75.0 | 71.13 |
| Solyc03g097200.2.1 | Tomato | cytosol, mitochondrion, nucleus | 72.83 | 69.07 |
| KRH29302 | Soybean | cytosol | 50.0 | 67.65 |
| TraesCS4A01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 61.96 | 64.77 |
| GSMUA_Achr4P19150_001 | Banana | cytosol, nucleus, plastid | 68.48 | 64.29 |
| EER90478 | Sorghum | plastid | 65.22 | 63.83 |
| TraesCS5B01G561200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 64.13 | 63.44 |
| TraesCS5D01G568600.1 | Wheat | plastid | 64.13 | 63.44 |
| CDY39296 | Canola | cytosol, mitochondrion, nucleus | 64.13 | 62.77 |
| Os03t0857750-00 | Rice | cytosol | 8.7 | 17.78 |
Protein Annotations
| EMBL:ACUP02007166 | EnsemblPlants:KRH24014 | EnsemblPlantsGene:GLYMA_12G016700 | EntrezGene:100775288 | PANTHER:PTHR35106 | PANTHER:PTHR35106:SF1 |
| ProteinID:KRH24014 | ProteinID:KRH24014.1 | UniParc:UPI000233D01B | UniProt:K7LSG9 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr12:+:1184026..1187721
Molecular Weight (calculated)
10786.2 Da
IEP (calculated)
5.161
GRAVY (calculated)
-1.310
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MENEKEKEKQ WMSNSKVCKR CKQNYDPSSN TSTSCRFHTS FFVCRRHDDQ KRYYELGPDD PPYAAKFYDC CGAEDPEASG CTTNFHVSYD ED
1: MEKKEMEKLC QRCKQSYTDL SNETSSCRFH PSFFVCRRHD DQKRYYELKP DDPPYAAKFY DCCGAEDPNA PGCVTNPHIS YDD
Arabidopsis Description
At1g65000 [Source:UniProtKB/TrEMBL;Acc:Q8GXU4]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.