Factsheet for Os02t0672700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0857750-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07950.1	Os03t0857750-00	AT1G65000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P30460_001	Banana	cytosol, nucleus, plastid	75.45	75.45
Zm00001d051430_P001	Maize	cytosol, extracellular, nucleus	73.64	73.64
KXG31022	Sorghum	cytosol, extracellular, nucleus	73.64	73.64
GSMUA_Achr11P...	Banana	plastid	62.73	66.99
VIT_15s0046g00090.t01	Wine grape	nucleus	58.18	57.66
TraesCS6D01G236300.1	Wheat	cytosol, extracellular, plastid	46.36	56.67
TraesCS6B01G270500.1	Wheat	cytosol, extracellular, plastid	45.45	55.56
HORVU6Hr1G064960.2	Barley	cytosol, extracellular, plastid	46.36	53.68
AT4G07950.1	Thale cress	nucleus	50.0	51.89
AT1G01210.3	Thale cress	nucleus	49.09	50.94
KRG99913	Soybean	nucleus	50.91	50.45
KRH49087	Soybean	cytosol, mitochondrion, nucleus	50.91	50.45
PGSC0003DMT400060328	Potato	cytosol, nucleus, plastid	50.0	49.55
Solyc05g055890.2.1	Tomato	nucleus	50.0	49.55
Bra024774.1-P	Field mustard	nucleus	45.45	48.54
Bra006662.1-P	Field mustard	nucleus	44.55	47.57
CDY60371	Canola	nucleus	44.55	47.57
CDX88756	Canola	nucleus	44.55	47.57
CDY67373	Canola	nucleus	43.64	46.6
TraesCS6A01G255000.1	Wheat	cytosol, extracellular, plastid	49.09	46.55
CDY67995	Canola	cytosol, extracellular, nucleus	44.55	29.17
Bra032625.1-P	Field mustard	cytosol, extracellular, nucleus	44.55	29.17
CDY37996	Canola	nucleus	44.55	27.22

Protein Annotations

Gene3D:2.20.25.10	MapMan:35.2	EntrezGene:4330285	EMBL:AK059611	EMBL:AK099179	ProteinID:BAD27819.1
ProteinID:BAD27861.1	ProteinID:BAF09622.1	ProteinID:BAS80248.1	InterPro:DNA-dir_RNA_pol_M/15kDasu	GO:GO:0001056	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005666	GO:GO:0005730	GO:GO:0006139
GO:GO:0006351	GO:GO:0006379	GO:GO:0006386	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0042779	GO:GO:0046872	InterPro:IPR001222
EnsemblPlantsGene:Os02g0672700	EnsemblPlants:Os02t0672700-01	PFAM:PF01096	PFAM:PF02150	PIRSF:PIRSF005586	ScanProsite:PS00466
PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF12	UniProt:Q6EU09	InterPro:Rpa12/Rpb9/Rpc10/TFS	SMART:SM00440
SMART:SM00661	SUPFAM:SSF57783	UniParc:UPI00003CE50C	RefSeq:XP_015625442.1	InterPro:Zn_ribbon_RPC11_C	InterPro:Znf_TFIIS

Description

DNA-directed RNA polymerase, M/15 kDa subunit domain containing protein. (Os02t0672700-01)

Coordinates

chr2:+:27369142..27371727

Molecular Weight (calculated)

12723.4 Da

IEP (calculated)

8.250

GRAVY (calculated)

-0.636

Length

110 amino acids

Sequence
(BLAST)

001: MEFCPGCGML LQIQPATGGN RLRFYCPTCP YVCPVKNKIV KKARLVKKEV EPIFSDSDAM KNAPKTTTTC PRCQNGEAYY RQMQIRSADE PMSTFYKCCR
101: EECQFDWRED

Best Arabidopsis Sequence Match ( AT4G07950.1 )
(BLAST)

001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE

Arabidopsis Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.