CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY07440
CDY39296

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07950.1	CDY07440	AT1G65000.1	21798944
AT4G07950.1	CDY39296	AT1G65000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88756	Canola	nucleus	99.03	99.03
CDY60371	Canola	nucleus	99.03	99.03
AT1G01210.3	Thale cress	nucleus	87.38	84.91
AT4G07950.1	Thale cress	nucleus	86.41	83.96
CDY67995	Canola	cytosol, extracellular, nucleus	99.03	60.71
CDY37996	Canola	nucleus	99.03	56.67
KRH49087	Soybean	cytosol, mitochondrion, nucleus	56.31	52.25
VIT_15s0046g00090.t01	Wine grape	nucleus	56.31	52.25
KRG99913	Soybean	nucleus	56.31	52.25
GSMUA_Achr11P...	Banana	plastid	46.6	46.6
KXG31022	Sorghum	cytosol, extracellular, nucleus	48.54	45.45
Zm00001d051430_P001	Maize	cytosol, extracellular, nucleus	47.57	44.55
GSMUA_Achr4P30460_001	Banana	cytosol, nucleus, plastid	46.6	43.64
Os02t0672700-01	Rice	extracellular, nucleus, plastid	46.6	43.64
PGSC0003DMT400060328	Potato	cytosol, nucleus, plastid	45.63	42.34
Solyc05g055890.2.1	Tomato	nucleus	45.63	42.34
TraesCS6B01G270500.1	Wheat	cytosol, extracellular, plastid	24.27	27.78
TraesCS6D01G236300.1	Wheat	cytosol, extracellular, plastid	24.27	27.78
HORVU6Hr1G064960.2	Barley	cytosol, extracellular, plastid	25.24	27.37
TraesCS6A01G255000.1	Wheat	cytosol, extracellular, plastid	26.21	23.28

Protein Annotations

Gene3D:2.20.25.10	MapMan:35.2	GO:A0A078JII9	UniProt:A0A078JII9	EnsemblPlants:CDY67373	ProteinID:CDY67373
ProteinID:CDY67373.1	InterPro:DNA-dir_RNA_pol-M_15_CS	InterPro:DNA-dir_RNA_pol_M/15kDasu	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006379	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0042779
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00062850001	InterPro:IPR001222	PFAM:PF01096	PFAM:PF02150	PIRSF:PIRSF005586
ScanProsite:PS00466	ScanProsite:PS01030	PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF12	InterPro:Rpa12/Rpb9/Rpc10/TFS
SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783	InterPro:TFS	TIGRFAMs:TIGR01384	UniParc:UPI0002665C7D
InterPro:Zn_ribbon_RPC11_C	InterPro:Znf_TFIIS	:	:	:	:

Description

BnaC03g71500DDNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A078JII9]

Coordinates

chrLK036041:+:1683..2603

Molecular Weight (calculated)

12058.5 Da

IEP (calculated)

8.393

GRAVY (calculated)

-0.733

Length

103 amino acids

Sequence
(BLAST)

001: MEFCPTCGNL LRYGQSQFFC STCPYIARIE RQVEIKKKQL LVKKSIDAVV KKDDIPKGPE TEAPCPRCGH DKAYFKTMQI RSADEPESRF YRCVKCEQTW
101: REE

Best Arabidopsis Sequence Match ( AT1G01210.2 )
(BLAST)

001: MEFCPTCGNL LRYEGGGNSR FFCSTCPYVA YIQRQVEIKK KQLLVKKSIE AVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE

Arabidopsis Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9LNK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.