CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY07440
CDY39296

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07950.1	CDY07440	AT1G65000.1	21798944
AT4G07950.1	CDY39296	AT1G65000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60371	Canola	nucleus	100.0	100.0
Bra006662.1-P	Field mustard	nucleus	99.03	99.03
CDY67373	Canola	nucleus	99.03	99.03
AT4G07950.1	Thale cress	nucleus	87.38	84.91
AT1G01210.3	Thale cress	nucleus	86.41	83.96
CDY67995	Canola	cytosol, extracellular, nucleus	100.0	61.31
CDY37996	Canola	nucleus	100.0	57.22
KRG99913	Soybean	nucleus	57.28	53.15
VIT_15s0046g00090.t01	Wine grape	nucleus	57.28	53.15
KRH49087	Soybean	cytosol, mitochondrion, nucleus	57.28	53.15
GSMUA_Achr11P...	Banana	plastid	46.6	46.6
KXG31022	Sorghum	cytosol, extracellular, nucleus	49.51	46.36
Zm00001d051430_P001	Maize	cytosol, extracellular, nucleus	48.54	45.45
Os02t0672700-01	Rice	extracellular, nucleus, plastid	47.57	44.55
GSMUA_Achr4P30460_001	Banana	cytosol, nucleus, plastid	46.6	43.64
PGSC0003DMT400060328	Potato	cytosol, nucleus, plastid	46.6	43.24
Solyc05g055890.2.1	Tomato	nucleus	46.6	43.24
TraesCS6B01G270500.1	Wheat	cytosol, extracellular, plastid	24.27	27.78
TraesCS6D01G236300.1	Wheat	cytosol, extracellular, plastid	24.27	27.78
HORVU6Hr1G064960.2	Barley	cytosol, extracellular, plastid	25.24	27.37
TraesCS6A01G255000.1	Wheat	cytosol, extracellular, plastid	26.21	23.28

Protein Annotations

Gene3D:2.20.25.10	MapMan:35.2	GO:A0A078J9G2	UniProt:A0A078J9G2	EnsemblPlants:CDX88756	ProteinID:CDX88756
ProteinID:CDX88756.1	ProteinID:CDY60371.1	InterPro:DNA-dir_RNA_pol-M_15_CS	InterPro:DNA-dir_RNA_pol_M/15kDasu	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006379
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0042779	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00148812001	InterPro:IPR001222	PFAM:PF01096	PFAM:PF02150
PIRSF:PIRSF005586	ScanProsite:PS00466	ScanProsite:PS01030	PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF12
InterPro:Rpa12/Rpb9/Rpc10/TFS	SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783	InterPro:TFS	TIGRFAMs:TIGR01384
UniParc:UPI0004EE0A69	InterPro:Zn_ribbon_RPC11_C	InterPro:Znf_TFIIS	:	:	:

Description

BnaA03g08930DDNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A078J9G2]

Coordinates

chrLK031856:+:798505..799416

Molecular Weight (calculated)

12084.6 Da

IEP (calculated)

8.393

GRAVY (calculated)

-0.766

Length

103 amino acids

Sequence
(BLAST)

001: MEFCPTCGNL LRYGQSQFFC STCPYIARIE RQVEIKKKQL LVKKSIDPVV KKDDIPKGPE TEAPCPRCGH DKAYFKTMQI RSADEPESRF YRCVKCEQTW
101: REE

Best Arabidopsis Sequence Match ( AT4G07950.1 )
(BLAST)

001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE

Arabidopsis Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.