Factsheet for GSMUA_Achr11P09760_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P19150_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07950.1	GSMUA_Achr4P19150_001	AT1G65000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P30460_001	Banana	cytosol, nucleus, plastid	78.64	73.64
KXG31022	Sorghum	cytosol, extracellular, nucleus	68.93	64.55
Zm00001d051430_P001	Maize	cytosol, extracellular, nucleus	67.96	63.64
Os02t0672700-01	Rice	extracellular, nucleus, plastid	66.99	62.73
VIT_15s0046g00090.t01	Wine grape	nucleus	59.22	54.95
AT4G07950.1	Thale cress	nucleus	50.49	49.06
AT1G01210.3	Thale cress	nucleus	50.49	49.06
KRH49087	Soybean	cytosol, mitochondrion, nucleus	52.43	48.65
KRG99913	Soybean	nucleus	52.43	48.65
Solyc05g055890.2.1	Tomato	nucleus	50.49	46.85
CDY60371	Canola	nucleus	46.6	46.6
Bra006662.1-P	Field mustard	nucleus	46.6	46.6
Bra024774.1-P	Field mustard	nucleus	46.6	46.6
CDX88756	Canola	nucleus	46.6	46.6
CDY67373	Canola	nucleus	46.6	46.6
PGSC0003DMT400060328	Potato	cytosol, nucleus, plastid	49.51	45.95
HORVU6Hr1G064960.2	Barley	cytosol, extracellular, plastid	36.89	40.0
TraesCS6D01G236300.1	Wheat	cytosol, extracellular, plastid	34.95	40.0
TraesCS6B01G270500.1	Wheat	cytosol, extracellular, plastid	33.98	38.89
TraesCS6A01G255000.1	Wheat	cytosol, extracellular, plastid	37.86	33.62
Bra032625.1-P	Field mustard	cytosol, extracellular, nucleus	46.6	28.57
CDY67995	Canola	cytosol, extracellular, nucleus	46.6	28.57
CDY37996	Canola	nucleus	46.6	26.67

Protein Annotations

Gene3D:2.20.25.10	MapMan:35.2	InterPro:DNA-dir_RNA_pol_M/15kDasu	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006379	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0042779	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr11G09760_001	EnsemblPlants:GSMUA_Achr11P09760_001	EnsemblPlants:GSMUA_Achr11T09760_001	InterPro:IPR001222	UniProt:M0RQV6	PFAM:PF01096
PIRSF:PIRSF005586	ScanProsite:PS00466	PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF12	InterPro:Rpa12/Rpb9/Rpc10/TFS
SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783	UniParc:UPI000294E37B	InterPro:Zn_ribbon_RPC11_C	InterPro:Znf_TFIIS

Description

Putative DNA-directed RNA polymerase III subunit RPC10 [Source:GMGC_GENE;Acc:GSMUA_Achr11G09760_001]

Coordinates

chr11:-:7601867..7603473

Molecular Weight (calculated)

12150.7 Da

IEP (calculated)

8.095

GRAVY (calculated)

-0.522

Length

103 amino acids

Sequence
(BLAST)

001: MEFCPTCGML LQIERASQGR RCRLFCPTCP YMVIKHNLVK KELEHIFSGA DSMKFAPRTA ATCPRCHHGE AFFRQMQIRS ADEPMTTFYR CCNERCNYEW
101: RDD

Best Arabidopsis Sequence Match ( AT1G01210.2 )
(BLAST)

001: MEFCPTCGNL LRYEGGGNSR FFCSTCPYVA YIQRQVEIKK KQLLVKKSIE AVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE

Arabidopsis Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9LNK0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.