Factsheet for Bra032625.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67995	Canola	cytosol, extracellular, nucleus	100.0	100.0
Bra006662.1-P	Field mustard	nucleus	60.71	99.03
Bra024774.1-P	Field mustard	nucleus	60.71	99.03
AT4G07950.1	Thale cress	nucleus	53.57	84.91
AT1G01210.3	Thale cress	nucleus	52.98	83.96
KRH49087	Soybean	cytosol, mitochondrion, nucleus	35.12	53.15
VIT_15s0046g00090.t01	Wine grape	nucleus	35.12	53.15
KRG99913	Soybean	nucleus	35.12	53.15
GSMUA_Achr11P...	Banana	plastid	28.57	46.6
KXG31022	Sorghum	cytosol, extracellular, nucleus	30.36	46.36
Zm00001d051430_P001	Maize	cytosol, extracellular, nucleus	29.76	45.45
Os02t0672700-01	Rice	extracellular, nucleus, plastid	29.17	44.55
GSMUA_Achr4P30460_001	Banana	cytosol, nucleus, plastid	28.57	43.64
PGSC0003DMT400060328	Potato	cytosol, nucleus, plastid	28.57	43.24
Solyc05g055890.2.1	Tomato	nucleus	28.57	43.24
TraesCS6B01G270500.1	Wheat	cytosol, extracellular, plastid	14.88	27.78
TraesCS6D01G236300.1	Wheat	cytosol, extracellular, plastid	14.88	27.78
HORVU6Hr1G064960.2	Barley	cytosol, extracellular, plastid	15.48	27.37
TraesCS6A01G255000.1	Wheat	cytosol, extracellular, plastid	16.07	23.28

Protein Annotations

Gene3D:2.20.25.10	MapMan:35.2	EnsemblPlantsGene:Bra032625	EnsemblPlants:Bra032625.1	EnsemblPlants:Bra032625.1-P	InterPro:DNA-dir_RNA_pol-M_15_CS
InterPro:DNA-dir_RNA_pol_M/15kDasu	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006379	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0042779	GO:GO:0046872	InterPro:IPR001222
UniProt:M4EUZ2	PFAM:PF01096	PFAM:PF02150	ScanProsite:PS00466	ScanProsite:PS01030	PFscan:PS51133
PANTHER:PTHR11239	PANTHER:PTHR11239:SF12	SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783	UniParc:UPI00025430FD
InterPro:Zn_ribbon_RPC11_C	InterPro:Znf_TFIIS	:	:	:	:

Description

AT4G07950 (E=2e-050) | DNA-directed RNA polymerase III family protein

Coordinates

chrA09:+:36908346..36911218

Molecular Weight (calculated)

19512.7 Da

IEP (calculated)

8.198

GRAVY (calculated)

-0.261

Length

168 amino acids

Sequence
(BLAST)

001: MTAEVAIRHI TDALKMINIS GPLKFFVYVA STSVSIIHVN FYKWKDVFDW EIGSLGEAFL LRLIEMEFCP TCGNLLRYGQ SQFFCSTCPY IARIERQVEI
101: KKKQLLVKKS IDPVVKKDDI PKGPETEAPC PRCGHDKAYF KTMQIRSADE PESRFYRCVK CEQTWREE

Best Arabidopsis Sequence Match ( AT4G07950.1 )
(BLAST)

001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE

Arabidopsis Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.