Factsheet for Bra024774.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60371	Canola	nucleus	99.03	99.03
Bra006662.1-P	Field mustard	nucleus	98.06	98.06
AT4G07950.1	Thale cress	nucleus	88.35	85.85
AT1G01210.3	Thale cress	nucleus	87.38	84.91
Bra032625.1-P	Field mustard	cytosol, extracellular, nucleus	99.03	60.71
KRH49087	Soybean	cytosol, mitochondrion, nucleus	58.25	54.05
VIT_15s0046g00090.t01	Wine grape	nucleus	58.25	54.05
KRG99913	Soybean	nucleus	58.25	54.05
KXG31022	Sorghum	cytosol, extracellular, nucleus	50.49	47.27
GSMUA_Achr11P...	Banana	plastid	46.6	46.6
Zm00001d051430_P001	Maize	cytosol, extracellular, nucleus	49.51	46.36
Os02t0672700-01	Rice	extracellular, nucleus, plastid	48.54	45.45
GSMUA_Achr4P30460_001	Banana	cytosol, nucleus, plastid	47.57	44.55
PGSC0003DMT400060328	Potato	cytosol, nucleus, plastid	47.57	44.14
Solyc05g055890.2.1	Tomato	nucleus	47.57	44.14
TraesCS6B01G270500.1	Wheat	cytosol, extracellular, plastid	25.24	28.89
TraesCS6D01G236300.1	Wheat	cytosol, extracellular, plastid	25.24	28.89
HORVU6Hr1G064960.2	Barley	cytosol, extracellular, plastid	26.21	28.42
TraesCS6A01G255000.1	Wheat	cytosol, extracellular, plastid	27.18	24.14

Protein Annotations

Gene3D:2.20.25.10	MapMan:35.2	EnsemblPlantsGene:Bra024774	EnsemblPlants:Bra024774.1	EnsemblPlants:Bra024774.1-P	InterPro:DNA-dir_RNA_pol-M_15_CS
InterPro:DNA-dir_RNA_pol_M/15kDasu	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006379	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0042779	GO:GO:0046872	InterPro:IPR001222
UniProt:M4E7L8	PFAM:PF01096	PFAM:PF02150	PIRSF:PIRSF005586	ScanProsite:PS00466	ScanProsite:PS01030
PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF12	InterPro:Rpa12/Rpb9/Rpc10/TFS	SMART:SM00440	SMART:SM00661
SUPFAM:SSF57783	InterPro:TFS	TIGRFAMs:TIGR01384	UniParc:UPI00025426B5	InterPro:Zn_ribbon_RPC11_C	InterPro:Znf_TFIIS

Description

AT4G07950 (E=6e-051) | DNA-directed RNA polymerase III family protein

Coordinates

chrA09:+:22837469..22838190

Molecular Weight (calculated)

12070.6 Da

IEP (calculated)

8.393

GRAVY (calculated)

-0.769

Length

103 amino acids

Sequence
(BLAST)

001: MEFCPTCGNL LRYGQSQFFC STCPYVARIE RQVEIKKKQL LVKKSIDPVV KKDDIPKGPE TEAPCPRCGH DKAYFKTMQI RSADEPESRF YRCVKCEQTW
101: REE

Best Arabidopsis Sequence Match ( AT4G07950.1 )
(BLAST)

001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE

Arabidopsis Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.