Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g097200.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G07950.1 | Solyc03g097200.2.1 | AT1G65000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060328 | Potato | cytosol, nucleus, plastid | 96.4 | 96.4 |
| VIT_15s0046g00090.t01 | Wine grape | nucleus | 59.46 | 59.46 |
| KRH49087 | Soybean | cytosol, mitochondrion, nucleus | 56.76 | 56.76 |
| KRG99913 | Soybean | nucleus | 56.76 | 56.76 |
| GSMUA_Achr11P... | Banana | plastid | 46.85 | 50.49 |
| AT4G07950.1 | Thale cress | nucleus | 47.75 | 50.0 |
| Os02t0672700-01 | Rice | extracellular, nucleus, plastid | 49.55 | 50.0 |
| GSMUA_Achr4P30460_001 | Banana | cytosol, nucleus, plastid | 49.55 | 50.0 |
| Bra024774.1-P | Field mustard | nucleus | 44.14 | 47.57 |
| KXG31022 | Sorghum | cytosol, extracellular, nucleus | 46.85 | 47.27 |
| Zm00001d051430_P001 | Maize | cytosol, extracellular, nucleus | 46.85 | 47.27 |
| CDY60371 | Canola | nucleus | 43.24 | 46.6 |
| CDX88756 | Canola | nucleus | 43.24 | 46.6 |
| AT1G01210.3 | Thale cress | nucleus | 44.14 | 46.23 |
| CDY67373 | Canola | nucleus | 42.34 | 45.63 |
| Bra006662.1-P | Field mustard | nucleus | 42.34 | 45.63 |
| TraesCS6D01G236300.1 | Wheat | cytosol, extracellular, plastid | 23.42 | 28.89 |
| CDY67995 | Canola | cytosol, extracellular, nucleus | 43.24 | 28.57 |
| Bra032625.1-P | Field mustard | cytosol, extracellular, nucleus | 43.24 | 28.57 |
| HORVU6Hr1G064960.2 | Barley | cytosol, extracellular, plastid | 24.32 | 28.42 |
| TraesCS6B01G270500.1 | Wheat | cytosol, extracellular, plastid | 22.52 | 27.78 |
| CDY37996 | Canola | nucleus | 43.24 | 26.67 |
| TraesCS6A01G255000.1 | Wheat | cytosol, extracellular, plastid | 27.03 | 25.86 |
Protein Annotations
| Gene3D:2.20.25.10 | MapMan:35.2 | GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005666 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006379 |
| GO:GO:0006386 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0042779 | GO:GO:0046872 | InterPro:IPR001222 | UniProt:K4C2R4 | PFAM:PF01096 |
| PIRSF:PIRSF005586 | ScanProsite:PS00466 | PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF12 | InterPro:Rpa12/Rpb9/Rpc10/TFS |
| SMART:SM00440 | SUPFAM:SSF57783 | EnsemblPlantsGene:Solyc05g055890.2 | EnsemblPlants:Solyc05g055890.2.1 | UniParc:UPI0002767443 | InterPro:Zn_ribbon_RPC11_C |
| InterPro:Znf_TFIIS | : | : | : | : | : |
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:K4C2R4]
Coordinates
chr5:+:65348068..65349966
Molecular Weight (calculated)
12909.6 Da
IEP (calculated)
6.955
GRAVY (calculated)
-0.617
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVCPDCGML LQYELPHMDR PARFFCPACP YVCNLENRIK MKRRQPLVKK QMDPVISTED MDNASTAEVP CPACGYREAA YYQVQIRSAD EPMTTFYKCK
101: NKLCGNNWRE D
101: NKLCGNNWRE D
001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE
101: FTWREE
Arabidopsis Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.