Factsheet for VIT_15s0046g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0039g01640.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07950.1	VIT_16s0039g01640.t01	AT1G65000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99913	Soybean	nucleus	71.17	71.17
KRH49087	Soybean	cytosol, mitochondrion, nucleus	70.27	70.27
Solyc05g055890.2.1	Tomato	nucleus	59.46	59.46
AT4G07950.1	Thale cress	nucleus	56.76	59.43
GSMUA_Achr11P...	Banana	plastid	54.95	59.22
GSMUA_Achr4P30460_001	Banana	cytosol, nucleus, plastid	58.56	59.09
Bra024774.1-P	Field mustard	nucleus	54.05	58.25
Os02t0672700-01	Rice	extracellular, nucleus, plastid	57.66	58.18
PGSC0003DMT400060328	Potato	cytosol, nucleus, plastid	57.66	57.66
AT1G01210.3	Thale cress	nucleus	54.95	57.55
CDY60371	Canola	nucleus	53.15	57.28
Bra006662.1-P	Field mustard	nucleus	53.15	57.28
CDX88756	Canola	nucleus	53.15	57.28
CDY67373	Canola	nucleus	52.25	56.31
KXG31022	Sorghum	cytosol, extracellular, nucleus	54.05	54.55
Zm00001d051430_P001	Maize	cytosol, extracellular, nucleus	54.05	54.55
TraesCS6B01G270500.1	Wheat	cytosol, extracellular, plastid	32.43	40.0
TraesCS6D01G236300.1	Wheat	cytosol, extracellular, plastid	32.43	40.0
HORVU6Hr1G064960.2	Barley	cytosol, extracellular, plastid	33.33	38.95
Bra032625.1-P	Field mustard	cytosol, extracellular, nucleus	53.15	35.12
CDY67995	Canola	cytosol, extracellular, nucleus	53.15	35.12
TraesCS6A01G255000.1	Wheat	cytosol, extracellular, plastid	35.14	33.62
CDY37996	Canola	nucleus	53.15	32.78

Protein Annotations

EntrezGene:100243245	wikigene:100243245	Gene3D:2.20.25.10	MapMan:35.2	ProteinID:CCB62559	ProteinID:CCB62559.1
InterPro:DNA-dir_RNA_pol_M/15kDasu	UniProt:F6I6G3	EMBL:FN596755	GO:GO:0001056	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005666	GO:GO:0005730	GO:GO:0006139	GO:GO:0006351
GO:GO:0006379	GO:GO:0006386	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0042779	GO:GO:0046872	InterPro:IPR001222	EntrezGene:LOC100243245
wikigene:LOC100243245	PFAM:PF01096	PIRSF:PIRSF005586	ScanProsite:PS00466	PFscan:PS51133	PANTHER:PTHR11239
PANTHER:PTHR11239:SF12	InterPro:Rpa12/Rpb9/Rpc10/TFS	SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783	TIGR:TC52859
TIGR:TC70854	UniParc:UPI0001986315	ArrayExpress:VIT_15s0046g00090	EnsemblPlantsGene:VIT_15s0046g00090	EnsemblPlants:VIT_15s0046g00090.t01	unigene:Vvi.5843
RefSeq:XP_002267122	RefSeq:XP_002267122.1	RefSeq:XP_010661974.1	RefSeq:XP_010661975.1	RefSeq:XP_019081215.1	InterPro:Zn_ribbon_RPC11_C
InterPro:Znf_TFIIS	:	:	:	:	:

Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F6I6G3]

Coordinates

chr15:+:17148336..17151207

Molecular Weight (calculated)

13045.7 Da

IEP (calculated)

8.145

GRAVY (calculated)

-0.692

Length

111 amino acids

Sequence
(BLAST)

001: MEFCPTCGNF LQYELPHMGR PARFFCPTCP YVCHIETKVK IKRKQRLVKK EIEPIFSKDD MKNGPTTDAT CPHCNFGKAV FQQLQTRSAD EPMSTFYWCL
101: NENCGRQWRE D

Best Arabidopsis Sequence Match ( AT4G07950.1 )
(BLAST)

001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE

Arabidopsis Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.