Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G07950.1 | Thale cress | nucleus | 95.28 | 95.28 |
| Bra024774.1-P | Field mustard | nucleus | 84.91 | 87.38 |
| CDY67373 | Canola | nucleus | 84.91 | 87.38 |
| CDX88756 | Canola | nucleus | 83.96 | 86.41 |
| CDY60371 | Canola | nucleus | 83.96 | 86.41 |
| Bra006662.1-P | Field mustard | nucleus | 83.02 | 85.44 |
| KRH49087 | Soybean | cytosol, mitochondrion, nucleus | 61.32 | 58.56 |
| KRG99913 | Soybean | nucleus | 59.43 | 56.76 |
| VIT_15s0046g00090.t01 | Wine grape | nucleus | 57.55 | 54.95 |
| Bra032625.1-P | Field mustard | cytosol, extracellular, nucleus | 83.96 | 52.98 |
| CDY67995 | Canola | cytosol, extracellular, nucleus | 83.96 | 52.98 |
| GSMUA_Achr11P... | Banana | plastid | 49.06 | 50.49 |
| CDY37996 | Canola | nucleus | 83.96 | 49.44 |
| KXG31022 | Sorghum | cytosol, extracellular, nucleus | 50.94 | 49.09 |
| Os02t0672700-01 | Rice | extracellular, nucleus, plastid | 50.94 | 49.09 |
| Zm00001d051430_P001 | Maize | cytosol, extracellular, nucleus | 50.0 | 48.18 |
| GSMUA_Achr4P30460_001 | Banana | cytosol, nucleus, plastid | 50.0 | 48.18 |
| PGSC0003DMT400060328 | Potato | cytosol, nucleus, plastid | 46.23 | 44.14 |
| Solyc05g055890.2.1 | Tomato | nucleus | 46.23 | 44.14 |
| TraesCS6D01G236300.1 | Wheat | cytosol, extracellular, plastid | 28.3 | 33.33 |
| TraesCS6B01G270500.1 | Wheat | cytosol, extracellular, plastid | 27.36 | 32.22 |
| HORVU6Hr1G064960.2 | Barley | cytosol, extracellular, plastid | 28.3 | 31.58 |
| TraesCS6A01G255000.1 | Wheat | cytosol, extracellular, plastid | 30.19 | 27.59 |
Protein Annotations
| Gene3D:2.20.25.10 | MapMan:35.2 | EntrezGene:839481 | UniProt:A0A178W0Q7 | ProteinID:AAF97332.1 | ProteinID:AEE27254.1 |
| EMBL:AK229520 | ProteinID:ANM60312.1 | ProteinID:ANM60313.1 | ArrayExpress:AT1G01210 | EnsemblPlantsGene:AT1G01210 | RefSeq:AT1G01210 |
| TAIR:AT1G01210 | RefSeq:AT1G01210-TAIR-G | EnsemblPlants:AT1G01210.3 | EMBL:BT008558 | EMBL:BT008671 | InterPro:DNA-dir_RNA_pol-M_15_CS |
| InterPro:DNA-dir_RNA_pol_M/15kDasu | GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005666 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006379 |
| GO:GO:0006386 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0042779 | GO:GO:0046872 | InterPro:IPR001222 | RefSeq:NP_001322609.1 | RefSeq:NP_001322610.1 |
| RefSeq:NP_171629.1 | ProteinID:OAP11818.1 | PFAM:PF01096 | PFAM:PF02150 | PIRSF:PIRSF005586 | ScanProsite:PS00466 |
| ScanProsite:PS01030 | PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF12 | UniProt:Q9LNK0 | InterPro:Rpa12/Rpb9/Rpc10/TFS |
| SMART:SM00440 | SMART:SM00661 | SUPFAM:SSF57783 | InterPro:TFS | TIGRFAMs:TIGR01384 | UniParc:UPI00000A7295 |
| InterPro:Zn_ribbon_RPC11_C | InterPro:Znf_TFIIS | : | : | : | : |
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9LNK0]
Coordinates
chr1:+:88883..90502
Molecular Weight (calculated)
12274.7 Da
IEP (calculated)
7.962
GRAVY (calculated)
-0.567
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFCPTCGNL LRYEGGGNSR FFCSTCPYVA YIQRQVEIKK KQLLVKKSIE AVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE
101: FTWREE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.