Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G07950.1 | CDY07440 | AT1G65000.1 | 21798944 |
| AT4G07950.1 | CDY39296 | AT1G65000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032625.1-P | Field mustard | cytosol, extracellular, nucleus | 100.0 | 100.0 |
| CDX88756 | Canola | nucleus | 61.31 | 100.0 |
| CDY60371 | Canola | nucleus | 61.31 | 100.0 |
| CDY67373 | Canola | nucleus | 60.71 | 99.03 |
| CDY37996 | Canola | nucleus | 93.45 | 87.22 |
| AT4G07950.1 | Thale cress | nucleus | 53.57 | 84.91 |
| AT1G01210.3 | Thale cress | nucleus | 52.98 | 83.96 |
| KRG99913 | Soybean | nucleus | 35.12 | 53.15 |
| VIT_15s0046g00090.t01 | Wine grape | nucleus | 35.12 | 53.15 |
| KRH49087 | Soybean | cytosol, mitochondrion, nucleus | 35.12 | 53.15 |
| GSMUA_Achr11P... | Banana | plastid | 28.57 | 46.6 |
| KXG31022 | Sorghum | cytosol, extracellular, nucleus | 30.36 | 46.36 |
| Zm00001d051430_P001 | Maize | cytosol, extracellular, nucleus | 29.76 | 45.45 |
| Os02t0672700-01 | Rice | extracellular, nucleus, plastid | 29.17 | 44.55 |
| GSMUA_Achr4P30460_001 | Banana | cytosol, nucleus, plastid | 28.57 | 43.64 |
| PGSC0003DMT400060328 | Potato | cytosol, nucleus, plastid | 28.57 | 43.24 |
| Solyc05g055890.2.1 | Tomato | nucleus | 28.57 | 43.24 |
| TraesCS6B01G270500.1 | Wheat | cytosol, extracellular, plastid | 14.88 | 27.78 |
| TraesCS6D01G236300.1 | Wheat | cytosol, extracellular, plastid | 14.88 | 27.78 |
| HORVU6Hr1G064960.2 | Barley | cytosol, extracellular, plastid | 15.48 | 27.37 |
| TraesCS6A01G255000.1 | Wheat | cytosol, extracellular, plastid | 16.07 | 23.28 |
Protein Annotations
| Gene3D:2.20.25.10 | MapMan:35.2 | GO:A0A078JNC7 | UniProt:A0A078JNC7 | EnsemblPlants:CDY67995 | ProteinID:CDY67995 |
| ProteinID:CDY67995.1 | InterPro:DNA-dir_RNA_pol-M_15_CS | InterPro:DNA-dir_RNA_pol_M/15kDasu | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006379 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0042779 |
| GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00068398001 | InterPro:IPR001222 | PFAM:PF01096 | PFAM:PF02150 | ScanProsite:PS00466 |
| ScanProsite:PS01030 | PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF12 | SMART:SM00440 | SMART:SM00661 |
| SUPFAM:SSF57783 | UniParc:UPI00025430FD | InterPro:Zn_ribbon_RPC11_C | InterPro:Znf_TFIIS | : | : |
Description
BnaAnng25800DBnaAnng25800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JNC7]
Coordinates
chrLK036741:+:1725..4757
Molecular Weight (calculated)
19512.7 Da
IEP (calculated)
8.198
GRAVY (calculated)
-0.261
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAEVAIRHI TDALKMINIS GPLKFFVYVA STSVSIIHVN FYKWKDVFDW EIGSLGEAFL LRLIEMEFCP TCGNLLRYGQ SQFFCSTCPY IARIERQVEI
101: KKKQLLVKKS IDPVVKKDDI PKGPETEAPC PRCGHDKAYF KTMQIRSADE PESRFYRCVK CEQTWREE
101: KKKQLLVKKS IDPVVKKDDI PKGPETEAPC PRCGHDKAYF KTMQIRSADE PESRFYRCVK CEQTWREE
001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE
101: FTWREE
Arabidopsis Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.