Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G07950.1 | CDY07440 | AT1G65000.1 | 21798944 |
| AT4G07950.1 | CDY39296 | AT1G65000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88756 | Canola | nucleus | 57.22 | 100.0 |
| CDY60371 | Canola | nucleus | 57.22 | 100.0 |
| CDY67373 | Canola | nucleus | 56.67 | 99.03 |
| CDY67995 | Canola | cytosol, extracellular, nucleus | 87.22 | 93.45 |
| AT4G07950.1 | Thale cress | nucleus | 50.0 | 84.91 |
| AT1G01210.3 | Thale cress | nucleus | 49.44 | 83.96 |
| KRH49087 | Soybean | cytosol, mitochondrion, nucleus | 32.78 | 53.15 |
| VIT_15s0046g00090.t01 | Wine grape | nucleus | 32.78 | 53.15 |
| KRG99913 | Soybean | nucleus | 32.78 | 53.15 |
| GSMUA_Achr11P... | Banana | plastid | 26.67 | 46.6 |
| KXG31022 | Sorghum | cytosol, extracellular, nucleus | 28.33 | 46.36 |
| Zm00001d051430_P001 | Maize | cytosol, extracellular, nucleus | 27.78 | 45.45 |
| Os02t0672700-01 | Rice | extracellular, nucleus, plastid | 27.22 | 44.55 |
| GSMUA_Achr4P30460_001 | Banana | cytosol, nucleus, plastid | 26.67 | 43.64 |
| PGSC0003DMT400060328 | Potato | cytosol, nucleus, plastid | 26.67 | 43.24 |
| Solyc05g055890.2.1 | Tomato | nucleus | 26.67 | 43.24 |
| TraesCS6B01G270500.1 | Wheat | cytosol, extracellular, plastid | 13.89 | 27.78 |
| TraesCS6D01G236300.1 | Wheat | cytosol, extracellular, plastid | 13.89 | 27.78 |
| HORVU6Hr1G064960.2 | Barley | cytosol, extracellular, plastid | 14.44 | 27.37 |
| TraesCS6A01G255000.1 | Wheat | cytosol, extracellular, plastid | 15.0 | 23.28 |
Protein Annotations
| Gene3D:2.20.25.10 | MapMan:35.2 | GO:A0A078HK11 | UniProt:A0A078HK11 | EnsemblPlants:CDY37996 | ProteinID:CDY37996 |
| ProteinID:CDY37996.1 | InterPro:DNA-dir_RNA_pol-M_15_CS | InterPro:DNA-dir_RNA_pol_M/15kDasu | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006379 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0042779 |
| GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00065050001 | InterPro:IPR001222 | PFAM:PF01096 | PFAM:PF02150 | ScanProsite:PS00466 |
| ScanProsite:PS01030 | PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF12 | SMART:SM00440 | SMART:SM00661 |
| SUPFAM:SSF57783 | UniParc:UPI0004EE2DAD | InterPro:Zn_ribbon_RPC11_C | InterPro:Znf_TFIIS | : | : |
Description
BnaCnng08570DBnaCnng08570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HK11]
Coordinates
chrLK032414:+:29170..33097
Molecular Weight (calculated)
20958.2 Da
IEP (calculated)
7.974
GRAVY (calculated)
-0.352
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAEVAIRHI TDALKMINIS GPLKFFVYVA STSFFRMFRT YDVSIESAEI YKWKDVFDWE IGSLGEAFQV NSSSHFIMEF CPTCGNLLRY GQSQFFCSTC
101: PYIARIERQV EIKKKQLLVK KSIDPVVKKD DIPKGPETEA PCPRCGHDKA YFKTMQIRSA DEPESRFYRC VKCEQTWREE
101: PYIARIERQV EIKKKQLLVK KSIDPVVKKD DIPKGPETEA PCPRCGHDKA YFKTMQIRSA DEPESRFYRC VKCEQTWREE
001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE
101: FTWREE
Arabidopsis Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.