CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90478

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07950.1	EER90478	AT1G65000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051430_P001	Maize	cytosol, extracellular, nucleus	95.45	95.45
Os02t0672700-01	Rice	extracellular, nucleus, plastid	73.64	73.64
GSMUA_Achr4P30460_001	Banana	cytosol, nucleus, plastid	70.0	70.0
GSMUA_Achr11P...	Banana	plastid	64.55	68.93
TraesCS6D01G236300.1	Wheat	cytosol, extracellular, plastid	44.55	54.44
VIT_15s0046g00090.t01	Wine grape	nucleus	54.55	54.05
TraesCS6B01G270500.1	Wheat	cytosol, extracellular, plastid	43.64	53.33
HORVU6Hr1G064960.2	Barley	cytosol, extracellular, plastid	44.55	51.58
KRH49087	Soybean	cytosol, mitochondrion, nucleus	51.82	51.35
KRG99913	Soybean	nucleus	51.82	51.35
AT4G07950.1	Thale cress	nucleus	49.09	50.94
AT1G01210.3	Thale cress	nucleus	49.09	50.94
Bra024774.1-P	Field mustard	nucleus	47.27	50.49
CDY60371	Canola	nucleus	46.36	49.51
Bra006662.1-P	Field mustard	nucleus	46.36	49.51
CDX88756	Canola	nucleus	46.36	49.51
CDY67373	Canola	nucleus	45.45	48.54
PGSC0003DMT400060328	Potato	cytosol, nucleus, plastid	47.27	46.85
Solyc05g055890.2.1	Tomato	nucleus	47.27	46.85
TraesCS6A01G255000.1	Wheat	cytosol, extracellular, plastid	47.27	44.83
CDY67995	Canola	cytosol, extracellular, nucleus	46.36	30.36
Bra032625.1-P	Field mustard	cytosol, extracellular, nucleus	46.36	30.36
CDY37996	Canola	nucleus	46.36	28.33

Protein Annotations

Gene3D:2.20.25.10	MapMan:35.2	UniProt:A0A194YS54	InterPro:DNA-dir_RNA_pol_M/15kDasu	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006379	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0042779
GO:GO:0046872	InterPro:IPR001222	EnsemblPlants:KXG31022	ProteinID:KXG31022	ProteinID:KXG31022.1	PFAM:PF01096
PIRSF:PIRSF005586	ScanProsite:PS00466	PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF12	InterPro:Rpa12/Rpb9/Rpc10/TFS
SMART:SM00440	SMART:SM00661	EnsemblPlantsGene:SORBI_3004G284900	SUPFAM:SSF57783	UniParc:UPI0003C71161	InterPro:Zn_ribbon_RPC11_C
InterPro:Znf_TFIIS	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:62735352..62737899

Molecular Weight (calculated)

12706.5 Da

IEP (calculated)

7.880

GRAVY (calculated)

-0.408

Length

110 amino acids

Sequence
(BLAST)

001: MEFCPVCGML LQIDPGTASH RLRLFCSVCP YVCPIQNKIV KKARLVKKEV EPIFSTADEM KSAPKTAVTC QRCNHGEAYF KQMQIRSADE PMTTIYRCCK
101: EECQHEWRED

Best Arabidopsis Sequence Match ( AT4G07950.1 )
(BLAST)

001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE

Arabidopsis Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.