CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24014
KRH29302

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07950.1	KRH24014	AT1G65000.1	21798944
AT4G07950.1	KRH29302	AT1G65000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49087	Soybean	cytosol, mitochondrion, nucleus	95.5	95.5
VIT_15s0046g00090.t01	Wine grape	nucleus	71.17	71.17
AT4G07950.1	Thale cress	nucleus	59.46	62.26
AT1G01210.3	Thale cress	nucleus	56.76	59.43
Bra024774.1-P	Field mustard	nucleus	54.05	58.25
Bra006662.1-P	Field mustard	nucleus	53.15	57.28
CDX88756	Canola	nucleus	53.15	57.28
CDY60371	Canola	nucleus	53.15	57.28
Solyc05g055890.2.1	Tomato	nucleus	56.76	56.76
CDY67373	Canola	nucleus	52.25	56.31
PGSC0003DMT400060328	Potato	cytosol, nucleus, plastid	54.95	54.95
GSMUA_Achr4P30460_001	Banana	cytosol, nucleus, plastid	53.15	53.64
GSMUA_Achr11P...	Banana	plastid	48.65	52.43
KXG31022	Sorghum	cytosol, extracellular, nucleus	51.35	51.82
Os02t0672700-01	Rice	extracellular, nucleus, plastid	50.45	50.91
Zm00001d051430_P001	Maize	cytosol, extracellular, nucleus	49.55	50.0
TraesCS6D01G236300.1	Wheat	cytosol, extracellular, plastid	28.83	35.56
CDY67995	Canola	cytosol, extracellular, nucleus	53.15	35.12
Bra032625.1-P	Field mustard	cytosol, extracellular, nucleus	53.15	35.12
TraesCS6B01G270500.1	Wheat	cytosol, extracellular, plastid	27.93	34.44
HORVU6Hr1G064960.2	Barley	cytosol, extracellular, plastid	28.83	33.68
CDY37996	Canola	nucleus	53.15	32.78
TraesCS6A01G255000.1	Wheat	cytosol, extracellular, plastid	31.53	30.17

Protein Annotations

EntrezGene:100815164	Gene3D:2.20.25.10	MapMan:35.2	EMBL:ACUP02011345	InterPro:DNA-dir_RNA_pol-M_15_CS	InterPro:DNA-dir_RNA_pol_M/15kDasu
EnsemblPlantsGene:GLYMA_18G179600	GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005666	GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006379	GO:GO:0006386
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0042779	GO:GO:0046872	UniProt:I1N2G1	InterPro:IPR001222	EnsemblPlants:KRG99913	ProteinID:KRG99913
ProteinID:KRG99913.1	ProteinID:KRG99914.1	PFAM:PF01096	PIRSF:PIRSF005586	ScanProsite:PS01030	PFscan:PS51133
PANTHER:PTHR11239	PANTHER:PTHR11239:SF12	InterPro:Rpa12/Rpb9/Rpc10/TFS	SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783
UniParc:UPI000233EF98	InterPro:Zn_ribbon_RPC11_C	InterPro:Znf_TFIIS	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:43319867..43323107

Molecular Weight (calculated)

12904.4 Da

IEP (calculated)

7.614

GRAVY (calculated)

-0.650

Length

111 amino acids

Sequence
(BLAST)

001: MEFCPSCGNM LQYELPYMGR PSRFFCSACP YVCHIENRVE IKRKQRLVRK EIEPIFSEDD MTNAPSTEAT CPFCGHGKAA FKEFQTRSAD EPATLFYKCL
101: NNDCKKQWRE G

Best Arabidopsis Sequence Match ( AT4G07950.1 )
(BLAST)

001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE

Arabidopsis Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.