CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24014
KRH29302

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G07950.1	KRH24014	AT1G65000.1	21798944
AT4G07950.1	KRH29302	AT1G65000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99913	Soybean	nucleus	95.5	95.5
VIT_15s0046g00090.t01	Wine grape	nucleus	70.27	70.27
AT4G07950.1	Thale cress	nucleus	61.26	64.15
AT1G01210.3	Thale cress	nucleus	58.56	61.32
Bra024774.1-P	Field mustard	nucleus	54.05	58.25
Bra006662.1-P	Field mustard	nucleus	53.15	57.28
CDX88756	Canola	nucleus	53.15	57.28
CDY60371	Canola	nucleus	53.15	57.28
Solyc05g055890.2.1	Tomato	nucleus	56.76	56.76
CDY67373	Canola	nucleus	52.25	56.31
PGSC0003DMT400060328	Potato	cytosol, nucleus, plastid	54.95	54.95
GSMUA_Achr4P30460_001	Banana	cytosol, nucleus, plastid	52.25	52.73
GSMUA_Achr11P...	Banana	plastid	48.65	52.43
KXG31022	Sorghum	cytosol, extracellular, nucleus	51.35	51.82
Os02t0672700-01	Rice	extracellular, nucleus, plastid	50.45	50.91
Zm00001d051430_P001	Maize	cytosol, extracellular, nucleus	49.55	50.0
CDY67995	Canola	cytosol, extracellular, nucleus	53.15	35.12
Bra032625.1-P	Field mustard	cytosol, extracellular, nucleus	53.15	35.12
TraesCS6D01G236300.1	Wheat	cytosol, extracellular, plastid	27.93	34.44
TraesCS6B01G270500.1	Wheat	cytosol, extracellular, plastid	27.03	33.33
CDY37996	Canola	nucleus	53.15	32.78
HORVU6Hr1G064960.2	Barley	cytosol, extracellular, plastid	27.93	32.63
TraesCS6A01G255000.1	Wheat	cytosol, extracellular, plastid	30.63	29.31

Protein Annotations

Gene3D:2.20.25.10	MapMan:35.2	EMBL:ACUP02004331	InterPro:DNA-dir_RNA_pol-M_15_CS	InterPro:DNA-dir_RNA_pol_M/15kDasu	EnsemblPlantsGene:GLYMA_07G131200
GO:GO:0001056	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005666
GO:GO:0005730	GO:GO:0006139	GO:GO:0006351	GO:GO:0006379	GO:GO:0006386	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0042779
GO:GO:0046872	UniProt:I1KJX9	InterPro:IPR001222	EnsemblPlants:KRH49087	ProteinID:KRH49087	ProteinID:KRH49087.1
PFAM:PF01096	PIRSF:PIRSF005586	ScanProsite:PS01030	PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF12
InterPro:Rpa12/Rpb9/Rpc10/TFS	SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783	UniParc:UPI00023C70F6	InterPro:Zn_ribbon_RPC11_C
InterPro:Znf_TFIIS	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:15535409..15538010

Molecular Weight (calculated)

12813.3 Da

IEP (calculated)

6.958

GRAVY (calculated)

-0.522

Length

111 amino acids

Sequence
(BLAST)

001: MEFCPTCGNM LQYELPYMGR PSRFFCSACP YVCLIENRVE IKRKQRLVSK EIEPIFSEDD MTNAASTEAT CPFCGHGKAA FKEFQTRSAD EPATLFYKCL
101: NNECKKQWRE G

Best Arabidopsis Sequence Match ( AT4G07950.1 )
(BLAST)

001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE

Arabidopsis Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.