Factsheet for Zm00001d051430_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
cytosol 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	extracellular, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31022	Sorghum	cytosol, extracellular, nucleus	95.45	95.45
Os02t0672700-01	Rice	extracellular, nucleus, plastid	73.64	73.64
GSMUA_Achr4P30460_001	Banana	cytosol, nucleus, plastid	70.0	70.0
GSMUA_Achr11P...	Banana	plastid	63.64	67.96
TraesCS6D01G236300.1	Wheat	cytosol, extracellular, plastid	45.45	55.56
TraesCS6B01G270500.1	Wheat	cytosol, extracellular, plastid	44.55	54.44
VIT_15s0046g00090.t01	Wine grape	nucleus	54.55	54.05
HORVU6Hr1G064960.2	Barley	cytosol, extracellular, plastid	45.45	52.63
AT4G07950.1	Thale cress	nucleus	49.09	50.94
AT1G01210.3	Thale cress	nucleus	48.18	50.0
KRG99913	Soybean	nucleus	50.0	49.55
KRH49087	Soybean	cytosol, mitochondrion, nucleus	50.0	49.55
Bra024774.1-P	Field mustard	nucleus	46.36	49.51
CDY60371	Canola	nucleus	45.45	48.54
CDX88756	Canola	nucleus	45.45	48.54
Bra006662.1-P	Field mustard	nucleus	45.45	48.54
CDY67373	Canola	nucleus	44.55	47.57
PGSC0003DMT400060328	Potato	cytosol, nucleus, plastid	47.27	46.85
Solyc05g055890.2.1	Tomato	nucleus	47.27	46.85
TraesCS6A01G255000.1	Wheat	cytosol, extracellular, plastid	48.18	45.69
CDY67995	Canola	cytosol, extracellular, nucleus	45.45	29.76
Bra032625.1-P	Field mustard	cytosol, extracellular, nucleus	45.45	29.76
CDY37996	Canola	nucleus	45.45	27.78

Protein Annotations

EntrezGene:100193056	Gene3D:2.20.25.10	MapMan:35.2	ProteinID:AQK54218.1	UniProt:B4FDM3	EMBL:BT035211
InterPro:DNA-dir_RNA_pol_M/15kDasu	EMBL:EU974231	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0006351	GO:GO:0006379	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0042779	GO:GO:0046872	InterPro:IPR001222
PFAM:PF01096	PIRSF:PIRSF005586	ScanProsite:PS00466	PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF12
InterPro:Rpa12/Rpb9/Rpc10/TFS	SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783	UniParc:UPI00017B64CD	EnsemblPlantsGene:Zm00001d051430
EnsemblPlants:Zm00001d051430_P001	EnsemblPlants:Zm00001d051430_T001	InterPro:Zn_ribbon_RPC11_C	InterPro:Znf_TFIIS	:	:

Description

DNA-directed RNA polymerase subunit

Coordinates

chr4:+:158331291..158334196

Molecular Weight (calculated)

12609.4 Da

IEP (calculated)

7.880

GRAVY (calculated)

-0.378

Length

110 amino acids

Sequence
(BLAST)

001: MEFCPVCGIL LQIDPGTGSH RLRLFCPVCP YVCPILNKIV KKARLVKKEV EPISSTADEM KSAPKTAVTC QRCNHGEAYF KQMQIRSADE PMTTIYRCCK
101: EECQHEWRED

Best Arabidopsis Sequence Match ( AT4G07950.1 )
(BLAST)

001: MEFCPTCGNL LRYEGGGSSR FFCSTCPYVA NIERRVEIKK KQLLVKKSIE PVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE

Arabidopsis Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9ZQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.