Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G318200.1 | |
| TraesCS5B01G561200.1 | |
| TraesCS5D01G568600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G07950.1 | TraesCS4A01G318200.1 | AT1G65000.1 | 21798944 |
| AT4G07950.1 | TraesCS5B01G561200.1 | AT1G65000.1 | 21798944 |
| AT4G07950.1 | TraesCS5D01G568600.1 | AT1G65000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G236300.1 | Wheat | cytosol, extracellular, plastid | 75.86 | 97.78 |
| TraesCS6B01G270500.1 | Wheat | cytosol, extracellular, plastid | 74.14 | 95.56 |
| HORVU6Hr1G064960.2 | Barley | cytosol, extracellular, plastid | 75.86 | 92.63 |
| Os02t0672700-01 | Rice | extracellular, nucleus, plastid | 46.55 | 49.09 |
| Zm00001d051430_P001 | Maize | cytosol, extracellular, nucleus | 45.69 | 48.18 |
| KXG31022 | Sorghum | cytosol, extracellular, nucleus | 44.83 | 47.27 |
| GSMUA_Achr4P30460_001 | Banana | cytosol, nucleus, plastid | 39.66 | 41.82 |
| GSMUA_Achr11P... | Banana | plastid | 33.62 | 37.86 |
| VIT_15s0046g00090.t01 | Wine grape | nucleus | 33.62 | 35.14 |
| KRG99913 | Soybean | nucleus | 30.17 | 31.53 |
| KRH49087 | Soybean | cytosol, mitochondrion, nucleus | 29.31 | 30.63 |
| AT1G01210.3 | Thale cress | nucleus | 27.59 | 30.19 |
| AT4G07950.1 | Thale cress | nucleus | 27.59 | 30.19 |
| Bra024774.1-P | Field mustard | nucleus | 24.14 | 27.18 |
| PGSC0003DMT400060328 | Potato | cytosol, nucleus, plastid | 25.86 | 27.03 |
| Solyc05g055890.2.1 | Tomato | nucleus | 25.86 | 27.03 |
| CDY60371 | Canola | nucleus | 23.28 | 26.21 |
| CDY67373 | Canola | nucleus | 23.28 | 26.21 |
| CDX88756 | Canola | nucleus | 23.28 | 26.21 |
| Bra006662.1-P | Field mustard | nucleus | 23.28 | 26.21 |
| CDY67995 | Canola | cytosol, extracellular, nucleus | 23.28 | 16.07 |
| Bra032625.1-P | Field mustard | cytosol, extracellular, nucleus | 23.28 | 16.07 |
| CDY37996 | Canola | nucleus | 23.28 | 15.0 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G255000.1 | EnsemblPlantsGene:TraesCS6A01G255000 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:DNA-dir_RNA_pol_M/15kDasu | InterPro:Nudix_N | KEGG:00230+3.6.1.13 | KEGG:00740+3.6.1.18 |
| PFAM:PF14803 | SMART:SM00661 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6A:+:472513496..472513957
Molecular Weight (calculated)
12734.5 Da
IEP (calculated)
8.495
GRAVY (calculated)
-0.393
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFCPACGML LQIQPATGGH RLRLFCPTCP YVCPIKNKIV KKARLVKREV ESAESAPKTE GEPKESAPKT DGEPKADGQL KQSAPKTEGE LFTLLFCLAT
101: AYWNSRLSSP LNCVHN
101: AYWNSRLSSP LNCVHN
001: MEFCPTCGNL LRYEGGGNSR FFCSTCPYVA YIQRQVEIKK KQLLVKKSIE AVVTKDDIPT AAETEAPCPR CGHDKAYFKS MQIRSADEPE SRFYRCLKCE
101: FTWREE
101: FTWREE
Arabidopsis Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:Q9LNK0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.