CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99913
KRH05385
KRH15632
KRH49087
KRH52310
KRH61646

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10810.1	KRG99913	AT4G07950.1	21798944
AT5G10810.1	KRH49087	AT4G07950.1	21798944
AT5G10810.1	KRH05385	AT5G10810.1	21798944
AT5G10810.1	KRH15632	AT5G10810.1	21798944
AT5G10810.1	KRH52310	AT5G10810.1	21798944
AT5G10810.1	KRH61646	AT5G10810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05385	Soybean	mitochondrion	90.2	90.2
KRH15632	Soybean	mitochondrion	88.24	88.24
KRH52310	Soybean	mitochondrion	71.57	85.88
Solyc08g006700.2.1	Tomato	cytosol, mitochondrion	60.78	84.93
PGSC0003DMT400067603	Potato	mitochondrion	81.37	79.81
GSMUA_Achr4P05940_001	Banana	cytosol	66.67	72.34
GSMUA_Achr4P12740_001	Banana	cytosol	66.67	72.34
Zm00001d051061_P001	Maize	cytosol, mitochondrion	70.59	69.9
HORVU6Hr1G056200.1	Barley	mitochondrion	69.61	68.93
TraesCS6D01G202800.1	Wheat	mitochondrion	69.61	68.93
TraesCS6A01G219900.1	Wheat	mitochondrion	69.61	68.93
TraesCS6B01G249300.1	Wheat	mitochondrion	69.61	68.93
EES07137	Sorghum	cytosol, mitochondrion	68.63	67.96
AT5G10810.1	Thale cress	cytosol	71.57	66.97
EES12451	Sorghum	mitochondrion	66.67	66.02
Zm00001d003148_P002	Maize	mitochondrion	62.75	65.98
TraesCS2A01G355000.1	Wheat	cytosol	65.69	65.05
CDY40120	Canola	cytosol	72.55	63.25
VIT_04s0008g06800.t01	Wine grape	plastid	74.51	55.47
Os02t0611450-00	Rice	extracellular	30.39	51.67
CDX97062	Canola	cytosol, plastid	68.63	50.72
Os04t0499200-01	Rice	extracellular	50.0	46.36
HORVU2Hr1G086230.3	Barley	mitochondrion	66.67	41.72
TraesCS2B01G373500.1	Wheat	plastid	65.69	30.18

Protein Annotations

EntrezGene:100813802	Gene3D:3.30.2260.10	MapMan:35.1	UniProt:A0A0R0K4J7	EMBL:ACUP02002179	InterPro:EHR_sf
InterPro:Enh_rudimentary	EnsemblPlantsGene:GLYMA_04G060200	GO:GO:0006139	GO:GO:0006221	GO:GO:0007049	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045747
InterPro:IPR035912	EnsemblPlants:KRH61646	ProteinID:KRH61646	ProteinID:KRH61646.1	PFAM:PD008105	PFAM:PF01133
PIRSF:PIRSF016393	PANTHER:PTHR12373	PANTHER:PTHR12373:SF0	SUPFAM:SSF143875	UniParc:UPI0003DED150	:

Description

hypothetical protein

Coordinates

chr4:-:4923335..4927166

Molecular Weight (calculated)

11960.5 Da

IEP (calculated)

9.485

GRAVY (calculated)

-0.343

Length

102 amino acids

Sequence
(BLAST)

001: MANRHTIILM QASTNRATRT FMDFESITQA MGGICALYER KLKELNPTIR NLSYDIVDLY NFIDGLADMS ALVYDHSSHA YVPHDRQWIK QRTFQHLKKL
101: LR

Best Arabidopsis Sequence Match ( AT5G10810.1 )
(BLAST)

001: MANHNSSRHT IILLQNSPSR ATRTFMDYDS IGQAMDGICG LYERKLKEIN PSLRNISYDI ADLYNFIDGL ADLSALVYDH SISAYLPYDR QWIKQKAFHH
101: LKRIANGGR

Arabidopsis Description

ATEREnhancer of rudimentary homolog [Source:UniProtKB/Swiss-Prot;Acc:Q96319]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.