Factsheet for GSMUA_Achr4P12740_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr4P05940_001
GSMUA_Achr4P12740_001
GSMUA_Achr4P30460_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10810.1	GSMUA_Achr11P...	AT4G07950.1	21798944
AT5G10810.1	GSMUA_Achr4P30460_001	AT4G07950.1	21798944
AT5G10810.1	GSMUA_Achr4P05940_001	AT5G10810.1	21798944
AT5G10810.1	GSMUA_Achr4P12740_001	AT5G10810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05940_001	Banana	cytosol	95.74	95.74
PGSC0003DMT400067603	Potato	mitochondrion	81.91	74.04
Solyc08g006700.2.1	Tomato	cytosol, mitochondrion	57.45	73.97
KRH15632	Soybean	mitochondrion	76.6	70.59
KRH05385	Soybean	mitochondrion	75.53	69.61
Zm00001d051061_P001	Maize	cytosol, mitochondrion	75.53	68.93
EES07137	Sorghum	cytosol, mitochondrion	73.4	66.99
AT5G10810.1	Thale cress	cytosol	77.66	66.97
KRH61646	Soybean	mitochondrion	72.34	66.67
TraesCS6D01G202800.1	Wheat	mitochondrion	71.28	65.05
HORVU6Hr1G056200.1	Barley	mitochondrion	71.28	65.05
TraesCS6B01G249300.1	Wheat	mitochondrion	71.28	65.05
TraesCS6A01G219900.1	Wheat	mitochondrion	71.28	65.05
EES12451	Sorghum	mitochondrion	68.09	62.14
KRH52310	Soybean	mitochondrion	55.32	61.18
TraesCS2A01G355000.1	Wheat	cytosol	65.96	60.19
Zm00001d003148_P002	Maize	mitochondrion	60.64	58.76
Os02t0611450-00	Rice	extracellular	37.23	58.33
CDY40120	Canola	cytosol	72.34	58.12
VIT_04s0008g06800.t01	Wine grape	plastid	77.66	53.28
Os04t0499200-01	Rice	extracellular	57.45	49.09
CDX97062	Canola	cytosol, plastid	71.28	48.55
HORVU2Hr1G086230.3	Barley	mitochondrion	67.02	38.65
TraesCS2B01G373500.1	Wheat	plastid	65.96	27.93

Protein Annotations

Gene3D:3.30.2260.10	MapMan:35.1	ncoils:Coil	InterPro:EHR_sf	InterPro:Enh_rudimentary	GO:GO:0006139
GO:GO:0006221	GO:GO:0007049	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045747	EnsemblPlantsGene:GSMUA_Achr4G12740_001	EnsemblPlants:GSMUA_Achr4P12740_001	EnsemblPlants:GSMUA_Achr4T12740_001
InterPro:IPR035912	UniProt:M0SND9	PFAM:PD008105	PFAM:PF01133	PIRSF:PIRSF016393	ScanProsite:PS01290
PANTHER:PTHR12373	PANTHER:PTHR12373:SF0	SUPFAM:SSF143875	UniParc:UPI00029489F7	:	:

Description

Enhancer of rudimentary homolog [Source:GMGC_GENE;Acc:GSMUA_Achr4G12740_001]

Coordinates

chr4:-:9433199..9434676

Molecular Weight (calculated)

10976.2 Da

IEP (calculated)

7.599

GRAVY (calculated)

-0.334

Length

94 amino acids

Sequence
(BLAST)

1: MQSSPNRATR TFMDYGSISQ AMDGICGLYE RKLKEINPTI QNITYDISDL YNFIDGLADL SALIFDHSIQ AYLPYDRLWI KHRMFQHLKR LASQ

Best Arabidopsis Sequence Match ( AT5G10810.1 )
(BLAST)

001: MANHNSSRHT IILLQNSPSR ATRTFMDYDS IGQAMDGICG LYERKLKEIN PSLRNISYDI ADLYNFIDGL ADLSALVYDH SISAYLPYDR QWIKQKAFHH
101: LKRIANGGR

Arabidopsis Description

ATEREnhancer of rudimentary homolog [Source:UniProtKB/Swiss-Prot;Acc:Q96319]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.