Factsheet for VIT_04s0008g06800.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
endoplasmic reticulum 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g06800.t01
VIT_15s0046g00090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10810.1	VIT_15s0046g00090.t01	AT4G07950.1	21798944
AT5G10810.1	VIT_04s0008g06800.t01	AT5G10810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006700.2.1	Tomato	cytosol, mitochondrion	46.72	87.67
PGSC0003DMT400067603	Potato	mitochondrion	63.5	83.65
KRH15632	Soybean	mitochondrion	60.58	81.37
KRH05385	Soybean	mitochondrion	59.85	80.39
GSMUA_Achr4P05940_001	Banana	cytosol	54.01	78.72
GSMUA_Achr4P12740_001	Banana	cytosol	53.28	77.66
Zm00001d051061_P001	Maize	cytosol, mitochondrion	56.2	74.76
KRH61646	Soybean	mitochondrion	55.47	74.51
HORVU6Hr1G056200.1	Barley	mitochondrion	55.47	73.79
EES07137	Sorghum	cytosol, mitochondrion	55.47	73.79
TraesCS6A01G219900.1	Wheat	mitochondrion	55.47	73.79
TraesCS6B01G249300.1	Wheat	mitochondrion	55.47	73.79
TraesCS6D01G202800.1	Wheat	mitochondrion	55.47	73.79
EES12451	Sorghum	mitochondrion	54.74	72.82
AT5G10810.1	Thale cress	cytosol	56.2	70.64
KRH52310	Soybean	mitochondrion	43.8	70.59
Zm00001d003148_P002	Maize	mitochondrion	48.91	69.07
CDY40120	Canola	cytosol	56.93	66.67
TraesCS2A01G355000.1	Wheat	cytosol	48.18	64.08
Os02t0611450-00	Rice	extracellular	27.01	61.67
CDX97062	Canola	cytosol, plastid	56.93	56.52
Os04t0499200-01	Rice	extracellular	37.96	47.27
HORVU2Hr1G086230.3	Barley	mitochondrion	50.37	42.33
TraesCS2B01G373500.1	Wheat	plastid	48.18	29.73

Protein Annotations

EntrezGene:100268014	wikigene:100268014	Gene3D:3.30.2260.10	MapMan:35.1	ProteinID:CCB46874	ProteinID:CCB46874.1
InterPro:EHR_sf	InterPro:Enh_rudimentary	UniProt:F6H345	EMBL:FN595231	GO:GO:0006139	GO:GO:0006221
GO:GO:0007049	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045747	InterPro:IPR035912	EntrezGene:LOC100268014	wikigene:LOC100268014	PFAM:PD008105
PFAM:PF01133	PIRSF:PIRSF016393	PANTHER:PTHR12373	PANTHER:PTHR12373:SF0	SUPFAM:SSF143875	TIGR:TC59474
UniParc:UPI0002109A83	ArrayExpress:VIT_04s0008g06800	EnsemblPlantsGene:VIT_04s0008g06800	EnsemblPlants:VIT_04s0008g06800.t01	unigene:Vvi.11756	RefSeq:XP_002285565
RefSeq:XP_002285565.1	RefSeq:XP_002285565.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:6805248..6812923

Molecular Weight (calculated)

15699.6 Da

IEP (calculated)

8.982

GRAVY (calculated)

-0.569

Length

137 amino acids

Sequence
(BLAST)

001: MTRRNPSPPS PSLPHFSSSS LKVSATNDSL SSSLNMANRH TIILMQTSQN RSTRTFMDYD SISQAMDGIC GLYERKLKDL NPANQNITYD IADLYNFIDG
101: LADMSALVYE HSIQAYLPYD RQWIKQRTLQ HLRRMAH

Best Arabidopsis Sequence Match ( AT5G10810.1 )
(BLAST)

001: MANHNSSRHT IILLQNSPSR ATRTFMDYDS IGQAMDGICG LYERKLKEIN PSLRNISYDI ADLYNFIDGL ADLSALVYDH SISAYLPYDR QWIKQKAFHH
101: LKRIANGGR

Arabidopsis Description

ATEREnhancer of rudimentary homolog [Source:UniProtKB/Swiss-Prot;Acc:Q96319]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.